Browse Element(s) Details


Os.20575.1.S1_at

Description gb:AK066994.1
DB_XREF= gi:32977012
TID=Os.20575.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088J21, full insert sequence.
FL= gb:AK066994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6224011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein
LOC_Os03g62224OsAffx.21120.1.S1_x_at2/113+35187189..35187906hypothetical protein
LOC_Os03g62230OsAffx.3671.1.S1_at11/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62230OsAffx.13726.1.S1_x_at1/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62240Os.20575.1.S1_at11/113+35191810..35194145expressed protein
LOC_Os03g62250Os.17288.1.S1_at11/113+35194672..35197631zinc finger family protein, putative, expressed
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20575.1.S1_at--571--8571Chr03:35192366..35192390 (25 bp)
TGGATTCATTCACCATACTGGAGTG
LOC_Os03g62240
Os.20575.1.S1_at--683--9871Chr03:35192288..35192312 (25 bp)
TACATTAGAACTCTTGGGCTCTCCG
LOC_Os03g62240
Os.20575.1.S1_at--35--9511Chr03:35192269..35192293 (25 bp)
TCTCCGATGATGACCTTCGCAAATT
LOC_Os03g62240
Os.20575.1.S1_at--1051--9871Chr03:35192224..35192248 (25 bp)
TACTTGGATGTGATCTTGACAGCGA
LOC_Os03g62240
Os.20575.1.S1_at--39--8531Chr03:35192154..35192178 (25 bp)
TGGAAAAACACTCCGGAGTCTTCTT
LOC_Os03g62240
Os.20575.1.S1_at--802--5071Chr03:35192068..35192092 (25 bp)
GCACCCGTTGCTGGGTTAGGTTCTA
LOC_Os03g62240
Os.20575.1.S1_at--603--1011Chr03:35192051..35192075 (25 bp)
AGGTTCTAGTTCTGCTCTACGTTAA
LOC_Os03g62240
Os.20575.1.S1_at--1039--9311Chr03:35191997..35192021 (25 bp)
TCCCAGCTATTTGTCTATTTCTATA
LOC_Os03g62240
Os.20575.1.S1_at--921--6551Chr03:35191920..35191944 (25 bp)
GATTAGCCTCAGCATGTTAGTTTTG
LOC_Os03g62240
Os.20575.1.S1_at--679--10751Chr03:35191887..35191911 (25 bp)
TTGAACAGCACCTTTTCCATACTAT
LOC_Os03g62240
Os.20575.1.S1_at--381--6491Chr03:35191831..35191855 (25 bp)
GATACCTGAATTTCTGTGAGTGCTT
LOC_Os03g62240
Target Sequence 
TGGATTCATTCACCATACTGGAGTGAAGAGAGAAAGAAGGAGGTTCCAAATGCTGAGGTGGTTAGTGGAGTACTGAACTA
CATTAGAACTCTTGGGCTCTCCGATGATGACCTTCGCAAATTGCTGAAGAAATTCCCAGAAGTACTTGGATGTGATCTTG
ACAGCGAGGTGAAACTGAATGTAGGCAAGCTGGACAGTGACTGGGGAATAAATGGAAAAACACTCCGGAGTCTTCTTTTA
AGGAATCCAAAAGTTTTGGGGTACAATGTGGACTGCCGAGGGGACTGCATGGCGCAGTGCACCCGTTGCTGGGTTAGGTT
CTAGTTCTGCTCTACGTTAATGTGCANAACTTACAGTTGAATTATAGGTTCCCAGCTATTTGTCTATTTCTATATCGGTT
ACTCAAAACCTNTCTTAACATAAACAAAACACATTTATAGTAGATGGATTAGCCTCAGCATGTTAGTTTTGTTTACATCT
TGAACAGCACCTTTTCCATACTATCTGTATCAGGGATGTAAAAACAAATATATCAGATACCTGAATTTCTGTGAGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis