Browse Element(s) Details


Os.20684.1.S1_at

Description gb:AK072060.1
DB_XREF= gi:32982083
TID=Os.20684.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110F19, full insert sequence.
FL= gb:AK072060.1 gb:AK120533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5243011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein
LOC_Os03g52370Os.16532.1.S1_at11/113+30025486..30026267expressed protein
LOC_Os03g52370Os.47327.1.S1_x_at1/113+30025486..30026267expressed protein
LOC_Os03g52380Os.47327.1.S1_x_at11/113+30026938..30027604expressed protein
LOC_Os03g52380Os.47327.1.S1_at11/113+30026938..30027604expressed protein
LOC_Os03g52390Os.6620.1.S1_at9/113+30028888..30029459type II proteinase inhibitor family protein, expressed
LOC_Os03g52400Os.27925.1.S1_at10/113+30031131..30031995Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410Os.55394.1.S1_at11/113+30032893..30033513expressed protein
LOC_Os03g52410OsAffx.18426.1.S1_x_at1/113+30032893..30033513expressed protein
LOC_Os03g52420OsAffx.18673.1.S1_at1/113+30034519..30035254hypothetical protein
LOC_Os03g52430Os.20684.1.S1_at11/113+30036022..30040667Mitochondrial carrier protein, expressed
LOC_Os03g52450Os.5151.1.S1_at11/113+30044853..30049640CCT motif family protein, expressed
LOC_Os03g52460Os.20397.1.S1_a_at10/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52460Os.22699.1.S1_at1/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52470Os.5965.1.S1_s_at11/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52470OsAffx.25367.1.S1_at1/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0015884biological_processfolic acid transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0009507cellular_componentchloroplast
GO:0009941cellular_componentchloroplast envelope
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0008517molecular_functionfolic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20684.1.S1_at--328--5831Chr03:30036972..30036996 (25 bp)
GACCTGGTAGTGATGGCACTCCAAA
LOC_Os03g52430
Os.20684.1.S1_at--386--7591Chr03:30036504..30036528 (25 bp)
GGGCATCACATCGAATCTGCTCAAA
LOC_Os03g52430
Os.20684.1.S1_at--995--5051Chr03:30036470..30036494 (25 bp)
GCAGCTTCCCTTACATTTGTGGTGT
LOC_Os03g52430
Os.20684.1.S1_at--538--3111Chr03:30036400..30036424 (25 bp)
AATATTTCCAATTGTTCCCAGGAGA
LOC_Os03g52430
Os.20684.1.S1_at--579--671Chr03:30036354..30036378 (25 bp)
ATGAAATACTGAGCCAATCCCACCT
LOC_Os03g52430
Os.20684.1.S1_at--452--5151Chr03:30036316..30036340 (25 bp)
GCAACATTCATCTTCATTGCTGCGT
LOC_Os03g52430
Os.20684.1.S1_at--755--71Chr03:30036301..30036325 (25 bp)
ATTGCTGCGTTATTGTCTCATCCAC
LOC_Os03g52430
Os.20684.1.S1_at--982--5311Chr03:30036172..30036196 (25 bp)
GAAGTAGTTCTTCCTGTAGTCCAGT
LOC_Os03g52430
Os.20684.1.S1_at--1070--7051Chr03:30036123..30036147 (25 bp)
GTAATCGGGAGCCTTTACAGGTCTA
LOC_Os03g52430
Os.20684.1.S1_at--884--9871Chr03:30036108..30036132 (25 bp)
TACAGGTCTACCCATGTGCATGTGT
LOC_Os03g52430
Os.20684.1.S1_at--1155--751Chr03:30036074..30036098 (25 bp)
ATGTCTACGGCTGCTCAACTGAGTT
LOC_Os03g52430
Target Sequence 
GACCTGGTAGTGATGGCACTCCAAAGTACAAAGATAGCTGGCATGTAGTGAAAGAAACTGCAAGGCATGAAGGTGTCCGT
GGATTTTACAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGT
GATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGT
CATGAAATACTGAGCCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACT
TANCATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACA
TAGATCAGTTTTTGTTTCTTCCTGAAGTAGTTCTTCCTGTAGTCCAGTTGAATACAGTTTTTGGATCCTTATGTAATCGG
GAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis