Browse Element(s) Details


Os.20810.2.S1_x_at

Description gb:AK070157.1
DB_XREF= gi:32980181
TID=Os.20810.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1143G03.11 (B1143G03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046D01, full insert sequence.
FL= gb:AK070157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3192010/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g318801/11hypothetical protein
LOC_Os08g319101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31880Os.20810.2.S1_x_at1/118+19630156..19631385hypothetical protein
LOC_Os08g31890NANA8+19633324..19634571hypothetical protein
LOC_Os08g31900OsAffx.17283.1.S1_at11/118+19637698..19639363hypothetical protein
LOC_Os08g31900OsAffx.26378.1.S1_at2/118+19637698..19639363hypothetical protein
LOC_Os08g31910Os.20810.4.S1_at3/118+19642384..19648692expressed protein
LOC_Os08g31910OsAffx.8676.1.S1_at1/118+19642384..19648692expressed protein
LOC_Os08g31910Os.20810.2.S1_x_at1/118+19642384..19648692expressed protein
LOC_Os08g31920Os.20810.2.S1_x_at10/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31920Os.20810.2.S1_at8/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31930Os.54248.1.S1_at11/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31930Os.32811.1.S1_at3/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31940Os.52322.1.S1_at11/118+19671302..19675908expressed protein
LOC_Os08g31940Os.53351.1.S1_x_at10/118+19671302..19675908expressed protein
LOC_Os08g31950Os.13954.1.S1_x_at10/118+19681458..19682008expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20810.2.S1_x_at--1089--4151Chr08:19654942..19654966 (25 bp)
CGCCGTCGTCGGCAAATGGTACTGC
LOC_Os08g31920
Os.20810.2.S1_x_at--948--731Chr08:19654911..19654935 (25 bp)
ATGTTCATCAGAGACGGCGAGCGGC
LOC_Os08g31920
Os.20810.2.S1_x_at--469--3471Chr08:19654875..19654899 (25 bp)
CAGGTCAACCGGTGCATGTTCTACG
LOC_Os08g31920
Os.20810.2.S1_x_at--739--732Chr08:19654860..19654884 (25 bp)
ATGTTCTACGAGATGACGCTGGAGC
LOC_Os08g31920
Os.20810.2.S1_x_at--108--8051Chr08:19654825..19654849 (25 bp)
GGAGATATACAGCTGCGACAACACT
LOC_Os08g31920
Os.20810.2.S1_x_at--1112--3391Chr08:19654792..19654816 (25 bp)
CAGCATCAGCGGCAAGCAGCCGGAT
LOC_Os08g31920
Os.20810.2.S1_x_at--543--3452Chr08:19654706..19654730 (25 bp)
CAGTAGTGCAAGAAGGTGGGCCTCA
LOC_Os08g31920
Os.20810.2.S1_x_at--366--7811Chr08:19654497..19654521 (25 bp)
GGTCGGTACTGGGACAAACCAAATG
LOC_Os08g31920
Os.20810.2.S1_x_at--175--7691Chr08:19654473..19654497 (25 bp)
GGGTATGAGCAAACGATGTACTACT
LOC_Os08g31920
Os.20810.2.S1_x_at--1095--8731Chr08:19654457..19654481 (25 bp)
TGTACTACTGCAACTATCGAATTTT
LOC_Os08g31920
Os.20810.2.S1_x_at--213--6111Chr08:19654399..19654423 (25 bp)
GAGTCGTTACATATTACTATATCTG
NONE
Target Sequence 
CGCCGTCGTCGGCAAATGGTACTGCCCGTTCATGTTCATCAGAGACGGCGAGCGGCGGCTCAAGGACCAGGTCAACCGGT
GCATGTTCTACGAGATGACGCTGGAGCAGAGGTGGGAGGAGATATACAGCTGCGACAACACTCACCGGGGCAGCATCAGC
GGCAAGCAGCCGGATGATGAGGTCAAGGTGAACGTGACGGTGCGCCGGTCGACGGCGCTGCTAGGCGGCACCGGTGCAGT
AGTGCAAGAAGGTGGGCCTCAGGAGGTCGACGGGGTGATGTGGTTTCGACCGGCGGCGCCGCCGCCGAACTCTGGCGCGG
CAGGTGGAGTTGGGGTGGACATGGTGGTGTGGGAGAAGATGAAGTGGGAGCTGGAGAGAGGAGGGTGGGTCGACGGTAAT
GGCGACGTGGAGAGTATCGAGAGGGTGGAGAGGCGTGAGGCGCTGGGTCGGTACTGGGACAAACCAAATGGGTATGAGCA
AACGATGTACTACTGCAACTATCGAATTTTAATTGTTTCTGTTAATGTATGATAGCTTAAAGAGAGTCGTTACATATTAC
TATATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20810.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis