Browse Element(s) Details


Os.20864.2.S1_at

Description gb:NM_193121.1
DB_XREF= gi:34913325
TID=Os.20864.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0455H11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0455H11.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g440501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os07g44070Os.37692.1.S1_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44070Os.18217.1.S1_s_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20864.2.S1_at--80--1471Chr07:26323660..26323884 (25 bp)
AGAATGAGCCTGTGCTATCGAAGAA
LOC_Os07g44050
Os.20864.2.S1_at--112--10131Chr07:26323299..26323647 (25 bp)
TATGACGCAGCCATGCCAATACTGT
NONE
Os.20864.2.S1_at--1161--3171Chr07:26323283..26323307 (25 bp)
CAATACTGTTCTTCGGTTCATGAGA
NONE
Os.20864.2.S1_at--1105--8851Chr07:26323251..26323275 (25 bp)
TGATGCAGTATTGCAGCAGTGGCAT
NONE
Os.20864.2.S1_at--628--1532Chr03:22046759..22047047 (25 bp)
AGCAGTGGCATTGTACGCTGATGCT
NONE
Os.20864.2.S1_at--1084--4731Chr07:26323221..26323245 (25 bp)
GCTGATGCTGATTAGTGAAGTCGTC
NONE
Os.20864.2.S1_at--642--5311Chr07:26323205..26323229 (25 bp)
GAAGTCGTCATTGCGGTTTTCAGGC
NONE
Os.20864.2.S1_at--1106--7871Chr07:26323009..26323215 (25 bp)
GGTTTTCAGGCTTTCAGATGCAGAT
NONE
Os.20864.2.S1_at--621--651Chr07:26322992..26323016 (25 bp)
ATGCAGATGTTGTGTGTGCTGCTTT
NONE
Os.20864.2.S1_at--729--9111Chr07:26322958..26322982 (25 bp)
TGCTGCTCCCTTTATCCATGGTAGA
NONE
Os.20864.2.S1_at--615--9091Chr07:26322955..26322979 (25 bp)
TGCTCCCTTTATCCATGGTAGATGG
NONE
Target Sequence 
AGAATGAGCCTGTGCTATCGAAGAACAGGCGGAAAGTTATGACGCAGCCATGCCAATACTGTTCTTCGGTTCATGAGAAG
GATGATGATGCAGTATTGCAGCAGTGGCATTGTACGCTGATGCTGATTAGTGAAGTCGTCATTGCGGTTTTCAGGCTTTC
AGATGCAGATGTTGTGTGTGCTGCTTTCTCACCTGCTGCTGCTCCCTTTATCCATGGTAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20864.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis