Browse Element(s) Details


Os.20898.1.S1_at

Description gb:AK070286.1
DB_XREF= gi:32980310
TID=Os.20898.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047K24, full insert sequence.
FL= gb:AK070286.1 gb:AK101174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4511011/11N6-adenosine-methyltransferase MT-A70, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45070Os.8293.1.S1_at11/112+27324306..27335863PINHEAD protein, putative, expressed
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20898.1.S1_at--962--1751Chr02:27359035..27359231 (25 bp)
ACCTGATGAGATGTACCCCATGCTA
LOC_Os02g45110
Os.20898.1.S1_at--607--3011Chr02:27359283..27359408 (25 bp)
AATGCACATGCTGGATGGCTTTCTC
LOC_Os02g45110
Os.20898.1.S1_at--91--7911Chr02:27359397..27359420 (24 bp)
GGATGGCTTTCTCTGGGTAACCAGT
LOC_Os02g45110
Os.20898.1.S1_at--833--5991Chr02:27359452..27359476 (25 bp)
GAGAGCACGGTACAAGGCTGCCTAT
LOC_Os02g45110
Os.20898.1.S1_at--1086--2931Chr02:27359465..27359489 (25 bp)
AAGGCTGCCTATCCTGATTCAGAGG
LOC_Os02g45110
Os.20898.1.S1_at--636--5951Chr02:27359511..27359535 (25 bp)
GAGCAAGCGCCCCTATAGATGGTGA
LOC_Os02g45110
Os.20898.1.S1_at--442--2371Chr02:27359552..27359576 (25 bp)
AAACCTACTGTATCAGACGGCGAGA
LOC_Os02g45110
Os.20898.1.S1_at--708--751Chr02:27359587..27359611 (25 bp)
ATGTGAAGCAGTCGGCACCTTACTT
LOC_Os02g45110
Os.20898.1.S1_at--500--6851Chr02:27359671..27359695 (25 bp)
GTATTTTATCACTCGTCAGCTTTAA
LOC_Os02g45110
Os.20898.1.S1_at--1001--6611Chr02:27359821..27359845 (25 bp)
GTTGGCAGACATCCATCTTGATAAT
LOC_Os02g45110
Os.20898.1.S1_at--1013--8511Chr02:27359845..27359869 (25 bp)
TGGAACGCGTGAGCCATTACTGATC
LOC_Os02g45110
Target Sequence 
ACCTGATGAGATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATG
CACATGCTGGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAG
GCTGCCTATCCTGATTCAGAGGTGCAGCCACCATCACCGCCCAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATC
ACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTGANGGACTATGACAT
TGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTA
AAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAAT
GCAGGAGGAGGGAAGAATTGTTGGGTTTTGTAATGTTGGCAGACATCCATCTTGATAATGGAACGCGTGAGCCATTACTG
ATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis