Browse Element(s) Details


Os.20940.1.S1_at

Description gb:AK067510.1
DB_XREF= gi:32977528
TID=Os.20940.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.20940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109K05, full insert sequence.
FL= gb:AK067510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2995011/11Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29910Os.9725.1.S1_x_at11/113+16994292..16998909expressed protein
LOC_Os03g29920OsAffx.25289.1.S1_x_at11/113+17001913..17004167heavy metal-associated domain containing protein, expressed
LOC_Os03g29930Os.56891.1.S1_at11/113+17008119..17009227expressed protein
LOC_Os03g29940OsAffx.31892.2.S1_x_at1/113+17015002..17021628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29950Os.20940.1.S1_at11/113+17022722..17027180Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g29960OsAffx.25290.1.S1_at11/113+17032788..17039265expressed protein
LOC_Os03g29960OsAffx.21694.1.S1_at1/113+17032788..17039265expressed protein
LOC_Os03g29970Os.49770.1.S1_s_at11/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29970OsAffx.23994.1.S1_x_at1/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29980Os.24495.2.S1_x_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29980Os.24495.1.S1_at11/113+17047007..17051204ACT domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006006biological_processglucose metabolism
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004345molecular_functionglucose-6-phosphate 1-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20940.1.S1_at--897--6211Chr03:17026718..17026742 (25 bp)
GAGGCGATCTACCTCAAGATCAACA
LOC_Os03g29950
Os.20940.1.S1_at--895--1271Chr03:17026734..17026758 (25 bp)
AGATCAACAGCAAGGTGCCCGGGCT
LOC_Os03g29950
Os.20940.1.S1_at--158--8531Chr03:17026770..17026794 (25 bp)
TGGACAGCAGCGACCTCAACCTGCT
LOC_Os03g29950
Os.20940.1.S1_at--355--6231Chr03:17026940..17026964 (25 bp)
GAGGCCAACAAGGTGGCACCCGAGC
LOC_Os03g29950
Os.20940.1.S1_at--576--5891Chr03:17026961..17026985 (25 bp)
GAGCTCTACCCGTACGGCAGCCGGG
LOC_Os03g29950
Os.20940.1.S1_at--819--2791Chr03:17027061..17027085 (25 bp)
AAGATCGATCGGAGTCGCTGTTACC
LOC_Os03g29950
Os.20940.1.S1_at--623--9331Chr03:17027075..17027099 (25 bp)
TCGCTGTTACCGTGCTTGCTATAAT
LOC_Os03g29950
Os.20940.1.S1_at--94--1791Chr03:17027083..17027107 (25 bp)
ACCGTGCTTGCTATAATCTTCATTT
LOC_Os03g29950
Os.20940.1.S1_at--822--9751Chr03:17027096..17027120 (25 bp)
TAATCTTCATTTACCATTTGCATTG
LOC_Os03g29950
Os.20940.1.S1_at--647--1731Chr03:17027108..17027132 (25 bp)
ACCATTTGCATTGATGAATTCTTTA
LOC_Os03g29950
Os.20940.1.S1_at--567--111Chr03:17027125..17027149 (25 bp)
ATTCTTTATTGGACTGCTCAGGGAC
LOC_Os03g29950
Target Sequence 
GAGGCGATCTACCTCAAGATCAACAGCAAGGTGCCCGGGCTGGGGATGAGGCTGGACAGCAGCGACCTCAACCTGCTCTA
CTCCGAGCGCTACCCCGCCGAGATCCCCGACGCCTACGAGCGCCTNCTNGCTCGACGCCATCGAGGGCGAGCGCCGCCTC
TTCATCCGCAGCGACGAGCTCGACGCCGCCTGGGCCATCTTCACCCCCGTCCTCGCCGACCTCGAGGCCAACAAGGTGGC
ACCCGAGCTCTACCCGTACGGCAGCCGGGGACCCGTCGGAGCGCACTACCTCGCCGCCAACCACAACGTCCGCTGGGGTG
ACATTAGCTAGCTCAGAAAANGAAAAGATCGATCGGAGTCGCTGTTACCGTGCTTGCTATAATCTTCATTTACCATTTGC
ATTGATGAATTCTTTATTGGACTGCTCAGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis