Browse Element(s) Details


Os.20977.2.S1_x_at

Description gb:NM_184789.1
DB_XREF= gi:34896667
TID=Os.20977.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0004B24.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0004B24.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3733010/11KOW motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37290Os.27940.1.S1_at11/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37290Os.50043.1.A1_at1/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein
LOC_Os03g37330Os.20977.1.S1_at11/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37330Os.20977.2.S1_x_at10/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37340NANA3+20649706..20650735hypothetical protein
LOC_Os03g37350OsAffx.1638.1.S1_at11/113+20653240..20653921transposon protein, putative, Pong sub-class
LOC_Os03g37360OsAffx.13211.1.S1_at11/113+20661656..20664252hypothetical protein
LOC_Os03g37377Os.54774.1.S1_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.54774.1.S1_x_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.52447.1.S1_x_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377OsAffx.13218.1.S1_at1/113+20665866..20671716retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20977.2.S1_x_at--314--6851Chr03:20646301..20646325 (25 bp)
GTATTCGGACTCAGAAAATGACCAT
LOC_Os03g37330
Os.20977.2.S1_x_at--1109--51Chr03:20646228..20646252 (25 bp)
ATTGCAATTGCACTTCAGCGGGCTG
LOC_Os03g37330
Os.20977.2.S1_x_at--633--10511Chr03:20646215..20646239 (25 bp)
TTCAGCGGGCTGTGCCAGGGCCAAA
LOC_Os03g37330
Os.20977.2.S1_x_at--780--6151Chr03:20646198..20646222 (25 bp)
GGGCCAAAGGTTAACCCTCTCGATG
LOC_Os03g37330
Os.20977.2.S1_x_at--979--9791Chr03:20646187..20646211 (25 bp)
TAACCCTCTCGATGATAAGCCAAAG
LOC_Os03g37330
Os.20977.2.S1_x_at--564--10091Chr03:20645998..20646022 (25 bp)
TAGGAAGGATTACTGGCTATGCCCA
LOC_Os03g37330
Os.20977.2.S1_x_at--317--8311Chr03:20645984..20646008 (25 bp)
GGCTATGCCCAGGTATTGTGGTCAA
LOC_Os03g37330
Os.20977.2.S1_x_at--911--5151Chr03:20645858..20645882 (25 bp)
GCAAGCATGTTCTTAGGGTCGACCA
LOC_Os03g37330
Os.20977.2.S1_x_at--71--1311Chr03:20645833..20645857 (25 bp)
AGATGAGCTTGAGACAGTTATCCCC
LOC_Os03g37330
Os.20977.2.S1_x_at--769--4711NONE
GCTGGTTGAGAAGGGCCTCTATGAT
NONE
Os.20977.2.S1_x_at--781--7551Chr03:20645701..20645725 (25 bp)
GGGCCTCTATGATGGGAAGGTTCTT
LOC_Os03g37330
Target Sequence 
GTATTCGGACTCAGAAAATGACCATGAGGGACAAGAGGAGGATGCAAAAGAAGCCAACAAAGCAGCAGGGAAGATTGCAA
TTGCACTTCAGCGGGCTGTGCCAGGGCCAAAGGTTAACCCTCTCGATGATAAGCCAAAGGTTAAATTTGGTTTTGAGGAA
GAGGATGAGGTGAGCGCGCGGGATAAGGAGAAGGAAGAGTTGGCCAAGAAGAAGGGAAAGGATGCTATAAACGCAGCAGA
AGCTAGGAGGTCAGCATTGGATGAGCTGATGAAGGAGGAGGAGAAAGCGAAGGAGCGGAGCAATAGGAAGGATTACTGGC
TATGCCCAGGTATTGTGGTCAAGGTGATGAGCAAGTCGCTGGCAGAGAAGGGGTACTGCAAACAGAAGGGTGTGGTGAAG
AGGGTGATTGATAAGTATGTTGGGGAGATTGAGATGCTGGAGAGCAAGCATGTTCTTAGGGTCGACCAAGATGAGCTTGA
GACAGTTATCCCCCAGATTGGTGGGCTGGTTGAGAAGGGCCTCTATGATGGGAAGGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20977.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis