Browse Element(s) Details


Os.21255.1.S1_x_at

Description gb:AK099830.1
DB_XREF= gi:32985039
TID=Os.21255.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105K20, full insert sequence.
FL= gb:AK099830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4405011/11INDETERMINATE-related protein 1, putative, expressed
LOC_Os09g383401/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44020Os.50320.1.S1_at11/118+27581198..27585830LG27/30-like gene, putative, expressed
LOC_Os08g44030OsAffx.29653.1.S1_at11/118+27587099..27587425hypothetical protein
LOC_Os08g44040Os.50320.1.S1_at4/118+27591651..27598426LG27/30-like gene, putative, expressed
LOC_Os08g44050Os.21255.1.S1_x_at11/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.21255.3.S1_x_at2/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.2.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.3.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44060OsAffx.29654.1.S1_at11/118+27609700..27609912hypothetical protein
LOC_Os08g44070OsAffx.17511.1.S1_at11/118+27623463..27623981expressed protein
LOC_Os08g44080OsAffx.29655.1.S1_at11/118+27626739..27627500hypothetical protein
LOC_Os08g44090Os.10947.1.S1_at11/118+27629093..27633020Endomembrane protein 70 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21255.1.S1_x_at--595--4911Chr08:27601114..27601138 (25 bp)
GCTTCTCCAGAAGGCCGCACAGATG
LOC_Os08g44050
Os.21255.1.S1_x_at--472--2531Chr08:27601053..27601077 (25 bp)
AACTCGCTACTCAGAGGTCTCGGAA
LOC_Os08g44050
Os.21255.1.S1_x_at--71--4771Chr08:27601011..27601035 (25 bp)
GCTCTGAACGGTAAGCCCGCCGGAG
LOC_Os08g44050
Os.21255.1.S1_x_at--637--8071Chr08:27600990..27601014 (25 bp)
GGAGCAGCCGGGTTCATCATGTCCG
LOC_Os08g44050
Os.21255.1.S1_x_at--375--6011Chr08:27600963..27600987 (25 bp)
GAGAGCTCGTCGAGGAGCACTGCTT
LOC_Os08g44050
Os.21255.1.S1_x_at--330--5951Chr08:27600949..27600973 (25 bp)
GAGCACTGCTTCTCAGACGGCGGAG
LOC_Os08g44050
Os.21255.1.S1_x_at--884--1431Chr08:27600926..27600950 (25 bp)
AGAACGAGAGCCAGCTCCGGGAGCT
LOC_Os08g44050
Os.21255.1.S1_x_at--865--1591Chr08:27600914..27600938 (25 bp)
AGCTCCGGGAGCTGATGATGAACAC
LOC_Os08g44050
Os.21255.1.S1_x_at--354--5172Chr09:22064491..22064515 (25 bp)
GCAAGCTGAGCACGAGGGACTTCCT
LOC_Os09g38340
Os.21255.1.S1_x_at--815--871Chr08:27600729..27600753 (25 bp)
ATGGCCGGCTCACTGGACCAAGAGA
LOC_Os08g44050
Os.21255.1.S1_x_at--51--10091Chr08:27600660..27600684 (25 bp)
TAGGGTTCATCGATGCATCATGCAA
LOC_Os08g44050
Target Sequence 
GCTTCTCCAGAAGGCCGCACAGATGGGCGCGACGACGAGCAGCGGCGGCGCCGGCAGCGTGAACTCGCTACTCAGAGGTC
TCGGAAGCGGCGGCGGCGGCGGCGCTCTGAACGGTAAGCCCGCCGGAGCAGCCGGGTTCATCATGTCCGGGGAGAGCTCG
TCGAGGAGCACTGCTTCTCAGACGGCGGAGAACGAGAGCCAGCTCCGGGAGCTGATGATGAACACGCTCTCGGCGACCGG
GGGCGGCACCGGCGCCGGAACGGTGTTCGTCGGCGGCGGCTTCCCCGGCGTGGACGACGGCAAGCTGAGCACGAGGGACT
TCCTCGGCGTGAGCGGCGGCGCGCCGGGGCTTCAACTGCGGCACGGCGGCGCCGCCGGGATGGGCATGGCCGGCTCACTG
GACCAAGAGATGAAGTAATTAATTAATTATTATATTAATTAACCACCAGATTATTAGGGTTCATCGATGCATCATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21255.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis