Browse Element(s) Details


Os.21261.1.A1_at

Description gb:CB676811
DB_XREF= gi:29680536
DB_XREF=OSJNEe13E15.r
CLONE=OSJNEe13E15
TID=Os.21261.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.21261 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568041.1 (A.thaliana) protein kinase like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0667011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06640Os.10361.1.S1_at11/1112+3217992..3221887expressed protein
LOC_Os12g06640Os.10232.1.A1_at9/1112+3217992..3221887expressed protein
LOC_Os12g06650Os.10319.1.S1_at11/1112+3225522..3228147pentatricopeptide, putative, expressed
LOC_Os12g06660Os.47560.1.S1_at11/1112+3230531..3233557Actin-7, putative, expressed
LOC_Os12g06670Os.21261.1.A1_at11/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06670OsAffx.5280.1.S1_at5/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06680OsAffx.22699.1.S1_x_at2/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06680OsAffx.28610.2.S1_x_at1/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06680OsAffx.31700.1.S1_at1/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06690OsAffx.29396.1.S1_x_at1/1112+3256421..3259803Transposable element protein, putative, Transposase_28
LOC_Os12g06690OsAffx.30787.3.S1_x_at1/1112+3256421..3259803Transposable element protein, putative, Transposase_28
LOC_Os12g06700NANA12+3261100..3261549hypothetical protein
LOC_Os12g06710NANA12+3263844..3267417retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21261.1.A1_at--1027--9111Chr12:3235643..3235667 (25 bp)
TTGGGAAGGCATTCCATCCAACCGA
LOC_Os12g06670
Os.21261.1.A1_at--13--10691Chr12:3235392..3235602 (25 bp)
TTGCACGTGTTCAGGGAACTTCAGG
LOC_Os12g06670
Os.21261.1.A1_at--852--6731Chr12:3235384..3235405 (22 bp)
GTTCAGGGAACTTCAGGAGAGGCCA
LOC_Os12g06670
Os.21261.1.A1_at--704--8091Chr12:3235339..3235363 (25 bp)
GGAGCCAAAGATTGATCCCCTGCAT
LOC_Os12g06670
Os.21261.1.A1_at--1065--10771Chr12:3235328..3235352 (25 bp)
TTGATCCCCTGCATATATTACCTGA
LOC_Os12g06670
Os.21261.1.A1_at--995--4271Chr12:3235321..3235345 (25 bp)
CCTGCATATATTACCTGACGTTTGT
LOC_Os12g06670
Os.21261.1.A1_at--374--431Chr12:3235229..3235253 (25 bp)
ATCATTTTTGGCTTGGTTTTGCATT
LOC_Os12g06670
Os.21261.1.A1_at--519--8471Chr12:3235221..3235245 (25 bp)
TGGCTTGGTTTTGCATTTTTATATG
LOC_Os12g06670
Os.21261.1.A1_at--595--10411Chr12:3235203..3235227 (25 bp)
TTATATGCATTTTGAGCAATCATCT
LOC_Os12g06670
Os.21261.1.A1_at--926--6171Chr12:3235134..3235158 (25 bp)
GAGGAAATTGGATCGGCCTAGCTTG
LOC_Os12g06670
Os.21261.1.A1_at--669--7971Chr12:3235125..3235149 (25 bp)
GGATCGGCCTAGCTTGATATATCAA
LOC_Os12g06670
Target Sequence 
TTGGGAAGGCATTCCATCCAACCGACCTCCTTTNTCAGATATATTAGCCGAANTAGAGGATNTTNTTGCACGTGTTCAGG
GAACTTCAGGAGAGGCCANCCAACGACAAGATGANTCAGGAGCCAAAGATTGATCCCCTGCATATATTACCTGACGTTTG
TNTCGTTNGTTCNCCNANGTGCTTGTTTAGGATGNGTGCCTCNCTAATNTTGAGAGGAGTAGAGNGTAATCATTTTTGGC
TTGGTTTTGCATTTTTATATGCATTTTGAGCAATCATCTNGGGGCCTAATTTTTTCGGTCTCAGTTCTCATTGTTNTTAC
ATAGAGGAAATTGGATCGGCCTAGCTTGATATATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21261.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis