Browse Element(s) Details


Os.21267.1.S1_at

Description gb:AK065727.1
DB_XREF= gi:32975745
TID=Os.21267.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035I17, full insert sequence.
FL= gb:AK065727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3778010/11NOL1/NOP2/sun family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37740NANA8+23769952..23773292retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g37750OsAffx.17383.1.S1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37750Os.19280.1.A1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37760Os.17554.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_s_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37770NANA8+23792703..23792963hypothetical protein
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810Os.6016.1.A1_s_at11/118+23818520..23820148expressed protein
LOC_Os08g37810Os.6016.1.A1_at11/118+23818520..23820148expressed protein
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21267.1.S1_at--1070--10391Chr08:23794708..23794732 (25 bp)
TTTTGCTCACTTTATTAATGCCAGA
LOC_Os08g37780
Os.21267.1.S1_at--153--5411Chr08:23794674..23794698 (25 bp)
GAAGCTGCATCATTGATACCTGGTT
LOC_Os08g37780
Os.21267.1.S1_at--512--7911Chr08:23794653..23794677 (25 bp)
GGTTGCTGTGTTGTAATCTTACGTG
LOC_Os08g37780
Os.21267.1.S1_at--688--931Chr08:23794486..23794510 (25 bp)
AGGCAACACTGAACGCCATGGTTTC
LOC_Os08g37780
Os.21267.1.S1_at--700--8571Chr08:23794468..23794492 (25 bp)
TGGTTTCTCCACCTGATCGGAAGGA
LOC_Os08g37780
Os.21267.1.S1_at--1--6031Chr08:23794436..23794460 (25 bp)
GAGAGGATCACACAACGCTTCGGGC
LOC_Os08g37780
Os.21267.1.S1_at--87--2011Chr08:23794263..23794287 (25 bp)
ACTCATACTCGCTCCGTATTAGGAA
LOC_Os08g37780
Os.21267.1.S1_at--827--811Chr08:23794215..23794239 (25 bp)
ATGGTCTCCAAAACTAGCTATGTGA
LOC_Os08g37780
Os.21267.1.S1_at--385--1551Chr08:23794183..23794207 (25 bp)
AGCTTGTGCTATTTCTGAGAGTTAC
LOC_Os08g37780
Os.21267.1.S1_at--1017--6811Chr08:23794140..23794164 (25 bp)
GTTTAACTCATACTCACGCAGTATT
LOC_Os08g37780
Os.21267.1.S1_at--505--7771NONE
GGTCTCCAAAATATAGCGTTAACTT
NONE
Target Sequence 
TTTTGCTCACTTTATTAATGCCAGATTTGGGGAGGAAGCTGCATCATTGATACCTGGTTGCTGTGTTGTAATCTTACGTG
AAGGTCATCAGAACCTAGATTTAGGTTCTATAACCATGGATCCCNCCNCAATTGCCATCGTTTGCTGGAGAGGCAAGGCA
ACACTGAACGCCATGGTTTCTCCACCTGATCGGAAGGAGCTGCTTGAGAGGATCACACAACGCTTCGGGCTCAAAGCATT
GAGAGTGGAGGAAGAGAACCCCCGACGGCAAAATTAATTGATGGATGATCAACGTTGTCNCATTGAGATGGATGATCAAG
AAGTCGTGAGGNCAGCAAAACGGAGCTGACACGGGTGATGGTATAGTGTGGTGGTTTAACTCATACTCGCTCCGTATTAG
GAAAGAAAGTTGTTTTGGACAGTGACATGGTCTCCAAAACTAGCTATGTGATAAAACTAGCTTGTGCTATTTCTGAGAGT
TACCTTTGGTATAGTGTGGTGGTTTAACTCATACTCACGCAGTATTCGTAAAGGAAGTCGTTTTGGACAGCAACACACGG
TCTCCAAAATATAGCGTTAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis