Browse Element(s) Details


Os.2132.1.S1_s_at

Description gb:AK073826.1
DB_XREF= gi:32983849
TID=Os.2132.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.11 (P0481E12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067F03, full insert sequence.
FL= gb:AK122148.1 gb:AK073826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5438011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0009570cellular_componentchloroplast stroma
GO:0003729molecular_functionmRNA binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2132.1.S1_s_at--905--6651Chr01:31614092..31614116 (25 bp)
GTTGCGAACCGGACGCCCTCACGTA
LOC_Os01g54380
Os.2132.1.S1_s_at--759--1891Chr01:31614072..31614096 (25 bp)
ACGTACAGCTACCTGGTGCACGGGC
LOC_Os01g54380
Os.2132.1.S1_s_at--785--2591Chr01:31614024..31614048 (25 bp)
AACGCCCGTGAGGTGTTCGATGAAA
LOC_Os01g54380
Os.2132.1.S1_s_at--682--9911Chr01:31613977..31614001 (25 bp)
TACGGAGCCGGCGTGCAACACGTTC
LOC_Os01g54380
Os.2132.1.S1_s_at--945--2471Chr01:31613961..31613985 (25 bp)
AACACGTTCGTCAGTGCGCTGGCCA
LOC_Os01g54380
Os.2132.1.S1_s_at--658--4751Chr01:31613763..31613787 (25 bp)
GCTGAGCGGAGAGCCTTGCTACGTT
LOC_Os01g54380
Os.2132.1.S1_s_at--1033--10711Chr01:31613748..31613772 (25 bp)
TTGCTACGTTCGCTGCACGATGAGT
LOC_Os01g54380
Os.2132.1.S1_s_at--1113--1871Chr01:31613732..31613756 (25 bp)
ACGATGAGTTCGGTGACGACGATTT
LOC_Os01g54380
Os.2132.1.S1_s_at--484--291Chr01:31613696..31613720 (25 bp)
ATAGATGGCGGAACACAAGGTGATT
LOC_Os01g54380
Os.2132.1.S1_s_at--282--5971Chr01:31613652..31613676 (25 bp)
GAGAAGCACTCATAATCCATCCGGC
LOC_Os01g54380
Os.2132.1.S1_s_at--730--8971Chr01:31613595..31613619 (25 bp)
TGAACACTACTAAATGCCATGAGAT
LOC_Os01g54380
Target Sequence 
GTTGCGAACCGGACGCCCTCACGTACAGCTACCTGGTGCACGGGCTGAGCGAGCAGGGCCGGACGAGGAACGCCCGTGAG
GTGTTCGATGAAATGCTGGCCAAGGGGCTGGCCCCTACGGAGCCGGCGTGCAACACGTTCGTCAGTGCGCTGGCCATGGC
AGGGGAGGCTGGGGAGGCGGAGCGTGTGATGTGGGACATGGCTCGGGCGGGAAGGGTGGTCGACGACGTCACGAGGAGGG
CGGTGGTGGAGGAGCTGTGGAGATCGGGGAGGAGGGACGACGCCGAAAGGGTGGTGAGGGAGATGGAGGAGCGAGGCATC
GTGGGTGGCGCTGAGCGGAGAGCCTTGCTACGTTCGCTGCACGATGAGTTCGGTGACGACGATTTGGATGTTGATGATAG
ATGGCGGAACACAAGGTGATTGTCTGACAGATGGAGAGTTGAGAAGCACTCATAATCCATCCGGCCATCCATGTCCCAAA
NACATGGCAATCAACATTGAACACTACTAAATGCCATGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2132.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis