Browse Element(s) Details


Os.21356.1.S1_at

Description gb:NM_183435.1
DB_XREF= gi:34893997
GEN=P0672D08.7
TID=Os.21356.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21356 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative sphingosine-1-phosphate lyase (P0672D08.7), mRNA.
PROD=putative sphingosine-1-phosphate lyase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0108011/11Sphingosine-1-phosphate lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01020NANA1+8174..9019cytochrome P450 family protein, putative
LOC_Os01g01030Os.33183.1.S1_at11/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01030Os.33183.2.S1_at10/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01040Os.27571.1.S1_at11/111+13123..17122expressed protein
LOC_Os01g01040Os.18676.1.S1_x_at2/111+13123..17122expressed protein
LOC_Os01g01050Os.27637.1.S1_at11/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01050Os.51208.1.S1_s_at1/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01060Os.4725.1.S1_at11/111+23940..2543740S ribosomal protein S5, putative, expressed
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01110OsAffx.30714.2.S1_s_at11/111+52716..54774hypothetical protein
LOC_Os01g01110OsAffx.12972.1.S1_at1/111+52716..54774hypothetical protein
LOC_Os01g01120Os.13225.1.S2_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01120Os.13225.1.S1_a_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01130Os.45872.1.S1_at11/111+60472..62466RNA, U transporter 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0004351molecular_functionglutamate decarboxylase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21356.1.S1_at--508--9911Chr01:36742..36766 (25 bp)
TACTGAATGGACTGGTGGGCTCTAT
LOC_Os01g01080
Os.21356.1.S1_at--337--8651Chr01:36757..36781 (25 bp)
TGGGCTCTATGTTTCACCTACTATT
LOC_Os01g01080
Os.21356.1.S1_at--898--5911Chr01:36813..36837 (25 bp)
GAGCTTGGGCTGCTATGACGTCTCT
LOC_Os01g01080
Os.21356.1.S1_at--699--5711Chr01:36829..36850 (22 bp)
GACGTCTCTTGGACTGAACGGTTAT
LOC_Os01g01080
Os.21356.1.S1_at--983--2091Chr01:37299..37323 (25 bp)
ACATGACTGTCGTGGCATTTGGCTC
LOC_Os01g01080
Os.21356.1.S1_at--332--8291Chr01:37312..37336 (25 bp)
GGCATTTGGCTCAGATTCGGTTGAT
LOC_Os01g01080
Os.21356.1.S1_at--356--2311Chr01:37367..37391 (25 bp)
AAAGGCTGGCACCTTAATGCTCTGC
LOC_Os01g01080
Os.21356.1.S1_at--1127--611Chr01:37383..37404 (22 bp)
ATGCTCTGCAGAGACCCAACAGTTT
LOC_Os01g01080
Os.21356.1.S1_at--315--7371Chr01:37518..37542 (25 bp)
GTGACACTGCAGCACACGGTCATAT
LOC_Os01g01080
Os.21356.1.S1_at--886--8731Chr01:37687..37710 (24 bp)
TGTAAAAGCAAATCCAGGGCCTATT
LOC_Os01g01080
Os.21356.1.S1_at--56--9291Chr01:37725..37749 (25 bp)
TCCGATTTACGGAGCTGCTGGCAAG
LOC_Os01g01080
Target Sequence 
TACTGAATGGACTGGTGGGCTCTATGTTTCACCTACTATTGCTGGAAGTAGGCCTGGTGGGTTGATAGCGGGAGCTTGGG
CTGCTATGACGTCTCTTGGACTGAACGGTTATATGGAAAATACAGGTCATATCATGGAAGTGTCGAAGAAAATACAAAGA
GGGATTGAAGATATCCCAGGGTTGTTTGTGATTGGAAAGCCAGACATGACTGTCGTGGCATTTGGCTCAGATTCGGTTGA
TATATTTGAGGTGAACGACATAATGTCATCAAAAGGCTGGCACCTTAATGCTCTGCAGAGACCCAACAGTTTACACATTT
GTGTGACACTGCAGCACACGGTCATATATGAGGAATTCCTGAAGGATCTGAAAGATTCAGTGGACACTGTAAAAGCAAAT
CCAGGGCCTATTAGCGGGGGGCGAGCTCCGATTTACGGAGCTGCTGGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis