Browse Element(s) Details


Os.21448.1.S1_s_at

Description gb:BQ909099
DB_XREF= gi:22307877
DB_XREF=T021C08
CLONE=T021C08
TID=Os.21448.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21448 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566371.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0464011/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04660Os.16097.1.S1_a_at11/111+2093994..2097496Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g04670OsAffx.10908.1.S1_at11/111+2099100..2099402hypothetical protein
LOC_Os01g04680OsAffx.22792.1.S1_at6/111+2101993..2104641retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21448.1.S1_s_at--1072--3911Chr01:2077516..2077540 (25 bp)
CGGCTCCAAGAATCCCTGAAATTTT
LOC_Os01g04640
Os.21448.1.S1_s_at--91--8731Chr01:2077543..2077567 (25 bp)
TGTCGGAGAGAACCACCAGGCAAGT
LOC_Os01g04640
Os.21448.1.S1_s_at--693--1111Chr01:2077565..2077589 (25 bp)
AGTGATCCTGGCCTTGCACAGCAGG
LOC_Os01g04640
Os.21448.1.S1_s_at--566--911Chr01:2077587..2077611 (25 bp)
AGGCTAACTTGGTTCGTGCACAGGC
LOC_Os01g04640
Os.21448.1.S1_s_at--892--5111Chr01:2077604..2077628 (25 bp)
GCACAGGCTCTACGACATTGCTTGT
LOC_Os01g04640
Os.21448.1.S1_s_at--605--2991Chr01:2077643..2077747 (25 bp)
AATGTTCATCTTGACGGTGTTCTCC
LOC_Os01g04640
Os.21448.1.S1_s_at--256--10591Chr01:2077742..2077766 (25 bp)
TTCTCCCTGTTCATAGCGTCAGTGA
LOC_Os01g04640
Os.21448.1.S1_s_at--675--7111Chr01:2077759..2077783 (25 bp)
GTCAGTGATCGCAAGCTGCTTCAGC
LOC_Os01g04640
Os.21448.1.S1_s_at--755--5711Chr01:2077789..2077949 (25 bp)
GACTCTCCTGTACCTAGTTGTGCTA
LOC_Os01g04640
Os.21448.1.S1_s_at--309--5091Chr01:2077951..2077975 (25 bp)
GCACCATGACGCTGCCTGTGATGTA
LOC_Os01g04640
Os.21448.1.S1_s_at--1066--8371Chr01:2078043..2078067 (25 bp)
GGCGACATCGATTCTGGTGTTTTCA
LOC_Os01g04640
Target Sequence 
CGGCTCCAAGAATCCCTGAAATTTTTGTGTCGGAGAGAACCACCAGGCAAGTGATCCTGGCCTTGCACAGCAGGCTAACT
TGGTTCGTGCACAGGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCAT
AGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGA
TGTACNGAGAATTACNGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACA
TCGATTCTGGTGTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21448.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis