Browse Element(s) Details


Os.21782.1.S1_x_at

Description gb:AK111779.1
DB_XREF= gi:37988442
TID=Os.21782.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains similarity to histone acetyltransferase GCN5 (OSJNBa0032I20.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078H10, full insert sequence.
FL= gb:AK111779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2804011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed
LOC_Os10g28070OsAffx.8127.1.S1_at11/1110+14248422..14249066retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010030biological_processpositive regulation of seed germination
GO:0045941biological_processpositive regulation of transcription
GO:0000123cellular_componenthistone acetyltransferase complex
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0004402molecular_functionhistone acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21782.1.S1_x_at--823--2791Chr10:14221884..14221908 (25 bp)
AAGATCAGCCTTTTCTCCTGATTAC
LOC_Os10g28040
Os.21782.1.S1_x_at--870--6951Chr10:14221858..14221882 (25 bp)
GTACTTACAGGCAACAACTTACTAA
LOC_Os10g28040
Os.21782.1.S1_x_at--188--4991Chr10:14221079..14221103 (25 bp)
GCATCCTGATGCTTGGCCATTCAAA
LOC_Os10g28040
Os.21782.1.S1_x_at--668--7931Chr10:14221046..14221070 (25 bp)
GGATTCACGTGATGTTCCTGACTAT
LOC_Os10g28040
Os.21782.1.S1_x_at--1053--2491Chr10:14220789..14220813 (25 bp)
AACTTATAACTCTCCCGATACAATC
LOC_Os10g28040
Os.21782.1.S1_x_at--72--9551Chr10:14220768..14220790 (23 bp)
TCTATTACAAGTGTGCCTCACGGCT
LOC_Os10g28040
Os.21782.1.S1_x_at--402--8331Chr10:14220042..14220066 (25 bp)
GGCTCGAGAGCTTCTTCTCAAACAA
LOC_Os10g28040
Os.21782.1.S1_x_at--287--2331Chr10:14220019..14220043 (25 bp)
AAAGTAGCATCTCAGCTTGCCCAAG
LOC_Os10g28040
Os.21782.1.S1_x_at--177--10691Chr10:14220003..14220027 (25 bp)
TTGCCCAAGCCTCAACGAAGAACTG
LOC_Os10g28040
Os.21782.1.S1_x_at--47--5671Chr10:14219979..14220003 (25 bp)
GACATGGTCTTTGGTACATCTGATA
LOC_Os10g28040
Os.21782.1.S1_x_at--1056--8811Chr10:14219911..14219935 (25 bp)
TGTTGTGCTTTCCAGCTTTGTAGTT
LOC_Os10g28040
Target Sequence 
AAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAATCTAATGCGTTCATTGTTGAAGAATATGA
ATGAGCATCCTGATGCTTGGCCATTCAAAGAGCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGAT
CCTATTGATTTGAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGTAGCTGACAT
GAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTATTACAAGTGTGCCTCACGGCTCGAGAGCT
TCTTCTCAAACAAAGTAGCATCTCAGCTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGT
CAATTGTNGTTGTAAAATTGTTNTAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21782.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis