Browse Element(s) Details


Os.2215.1.S1_at

Description gb:U88068.1
DB_XREF= gi:2286120
TID=Os.2215.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.2215 (NCBI UniGene Cluster)
DEF=Oryza sativa sec14 like protein mRNA, complete cds.
PROD=sec14 like protein
FL= gb:U88068.1 gb:AK121373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7021011/11Polyphosphoinositide-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70180Os.34126.1.S1_at11/111+40942566..40946479exostosin family protein, putative, expressed
LOC_Os01g70190Os.12406.1.S1_at6/111+40953240..40956348exostosin family protein, putative, expressed
LOC_Os01g70200Os.18736.1.S1_at11/111+40959968..40962961exostosin family protein, putative, expressed
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed
LOC_Os01g70230OsAffx.9651.1.S1_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70230OsAffx.9651.1.S1_x_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70240Os.53542.1.S1_x_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240Os.53542.1.S1_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_x_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.1.S1_at6/111+40995490..40998710heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2215.1.S1_at--884--2091Chr01:40974420..40974444 (25 bp)
ACATCGCGGCCATAGAGATCATGCA
LOC_Os01g70210
Os.2215.1.S1_at--945--1311Chr01:40974589..40974613 (25 bp)
AGAGGCTCGGCAAGGCCCTGATGAT
LOC_Os01g70210
Os.2215.1.S1_at--259--8851Chr01:40974649..40974673 (25 bp)
TGATCTACCCTTTCATCGACAATGT
LOC_Os01g70210
Os.2215.1.S1_at--754--7311Chr01:40974857..40974881 (25 bp)
GTGCTGCACCAGGAGATCGACGATA
LOC_Os01g70210
Os.2215.1.S1_at--222--531Chr01:40974872..40974896 (25 bp)
ATCGACGATAGCCAGATCCCGGATA
LOC_Os01g70210
Os.2215.1.S1_at--235--6851Chr01:40974920..40974944 (25 bp)
GTTTCCCTCAAGAACAACGCGCGAA
LOC_Os01g70210
Os.2215.1.S1_at--398--2611Chr01:40974935..40974959 (25 bp)
AACGCGCGAATTAACCTTGATTAGT
LOC_Os01g70210
Os.2215.1.S1_at--943--3131Chr01:40974970..40974994 (25 bp)
AATTAGCACGCAGTTATACCGATAA
LOC_Os01g70210
Os.2215.1.S1_at--243--1591Chr01:40975077..40975101 (25 bp)
AGCTCTCATATCACAGCTGGTCTCA
LOC_Os01g70210
Os.2215.1.S1_at--407--7811Chr01:40975095..40975119 (25 bp)
GGTCTCACTGTTTGTAGCATTGCCA
LOC_Os01g70210
Os.2215.1.S1_at--956--71Chr01:40975113..40975137 (25 bp)
ATTGCCATCGTCATTTATCTCAGTA
LOC_Os01g70210
Target Sequence 
ACATCGCGGCCATAGAGATCATGCAGAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACATG
TTCATGAAGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGNCAAGTTCGTGTTCGTGGACGACAAGAG
CTTGCAAGAGGTGCTGCACCAGGAGATCGACGATAGCCAGATCCCGGATACGTTGGGCGGGAAGCTGGCACCGGTTTCCC
TCAAGAACAACGCGCGAATTAACCTTGATTAGTAGCGAGGCTCAATTAGCACGCAGTTATACCGATAATCAAGCACAAGA
TTATACACACACGTATACTATACATGGATCGATGGGATGAACAAAAGATATGTGTAATTGTGAAAAATGCAGCTCTCATA
TCACAGCTGGTCTCACTGTTTGTAGCATTGCCATCGTCATTTATCTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis