Browse Element(s) Details


Os.22334.1.S1_s_at

Description gb:AU067876
DB_XREF= gi:5002767
DB_XREF=AU067876
CLONE=C10431_6Z
TID=Os.22334.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22334 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1928011/11Argininosuccinate lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed
LOC_Os03g19310Os.49103.1.S1_at11/113+10832847..10834573Glycosyltransferase 5, putative, expressed
LOC_Os03g19320OsAffx.3274.1.S1_at11/113+10839919..10841386hypothetical protein
LOC_Os03g19330OsAffx.12935.1.S1_at11/113+10843526..10844872Glycosyltransferase 3, putative
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004056molecular_functionargininosuccinate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22334.1.S1_s_at--835--6731Chr03:10826295..10826319 (25 bp)
GTTCATAAATGGTCGAGAAGACCTC
LOC_Os03g19280
Os.22334.1.S1_s_at--930--5951Chr03:10826309..10826333 (25 bp)
GAGAAGACCTCGAAAATCCGATTAT
LOC_Os03g19280
Os.22334.1.S1_s_at--849--9351Chr03:10826318..10826342 (25 bp)
TCGAAAATCCGATTATTGTGGTTCC
LOC_Os03g19280
Os.22334.1.S1_s_at--1042--7351Chr03:10826369..10826393 (25 bp)
GTGAACTTCTTTTATGGACGACAGT
LOC_Os03g19280
Os.22334.1.S1_s_at--889--10091Chr03:10826381..10826405 (25 bp)
TATGGACGACAGTTCGCTGTTGCTT
LOC_Os03g19280
Os.22334.1.S1_s_at--216--5651Chr03:10826388..10826412 (25 bp)
GACAGTTCGCTGTTGCTTTAATTTC
LOC_Os03g19280
Os.22334.1.S1_s_at--789--10611Chr03:10826393..10826417 (25 bp)
TTCGCTGTTGCTTTAATTTCAGAAC
LOC_Os03g19280
Os.22334.1.S1_s_at--114--191Chr03:10826408..10826432 (25 bp)
ATTTCAGAACGATCGATGCACTTGT
LOC_Os03g19280
Os.22334.1.S1_s_at--940--3411Chr03:10826412..10826436 (25 bp)
CAGAACGATCGATGCACTTGTATTG
LOC_Os03g19280
Os.22334.1.S1_s_at--1157--491Chr03:10826419..10826443 (25 bp)
ATCGATGCACTTGTATTGGGAACCA
LOC_Os03g19280
Os.22334.1.S1_s_at--389--6871Chr03:10826431..10826455 (25 bp)
GTATTGGGAACCATTGTTCTGCTGA
LOC_Os03g19280
Target Sequence 
GTTCATAAATGGTCGAGAAGACCTCGAAAATCCGATTATTGTGGTTCCNGTTTTTGAAAGTGGGTCGNNGTGTCGTGAAC
TTCTTTTATGGACGACAGTTCGCTGTTGCTTTAATTTCAGAACGATCGATGCACTTGTATTGGGAACCATTGTTCTGCTG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22334.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis