Browse Element(s) Details


Os.22451.1.A1_at

Description gb:AK067106.1
DB_XREF= gi:32977124
TID=Os.22451.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098L20, full insert sequence.
FL= gb:AK067106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g419107/11Sua5/YciO/YrdC/YwlC family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed
LOC_Os08g41890Os.6279.1.A1_at11/118+26315575..26320118microtubule associated protein family protein, putative, expressed
LOC_Os08g41900Os.46763.1.S1_at11/118+26319288..26329702expressed protein
LOC_Os08g41900OsAffx.2904.1.S1_at1/118+26319288..26329702expressed protein
LOC_Os08g41910Os.53175.1.S1_at11/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed
LOC_Os08g41910Os.22451.1.A1_at7/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed
LOC_Os08g41920Os.40855.2.S1_x_at8/118+26351194..26352800hypothetical protein
LOC_Os08g41920Os.40855.4.S1_x_at2/118+26351194..26352800hypothetical protein
LOC_Os08g41930Os.40855.5.S1_x_at1/118+26354418..26355038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22451.1.A1_at--829--5151Chr08:26333163..26333187 (25 bp)
GCAACCAAGGAATTGCCCAAACAAT
LOC_Os08g41910
Os.22451.1.A1_at--200--651NONE
ATGCATAAGGCATGGATCATCCACT
NONE
Os.22451.1.A1_at--18--7971NONE
GGATCATCCACTAGGTACGCGAAAA
NONE
Os.22451.1.A1_at--1161--5671Chr08:26333242..26333266 (25 bp)
GACTTCCAGATGACCCCATATGTGA
LOC_Os08g41910
Os.22451.1.A1_at--283--6311Chr08:26333250..26333274 (25 bp)
GATGACCCCATATGTGAAGCAATAT
LOC_Os08g41910
Os.22451.1.A1_at--893--9571Chr08:26333282..26333306 (25 bp)
TCTTGATGAGCCTTTGATCTGCACA
LOC_Os08g41910
Os.22451.1.A1_at--494--5871Chr08:26333289..26333504 (25 bp)
GAGCCTTTGATCTGCACAAGTGTCA
LOC_Os08g41910
Os.22451.1.A1_at--574--8831Chr08:26333296..26333690 (25 bp)
TGATCTGCACAAGTGTCAAATCTCT
LOC_Os08g41910
Os.22451.1.A1_at--1121--251NONE
ATATGAGCAACAGGGCCTTGATTTC
NONE
Os.22451.1.A1_at--672--10571NONE
TTCGTCAGGGAAAGGGCCCTAAGCT
NONE
Os.22451.1.A1_at--949--8911Chr08:26334935..26334959 (25 bp)
TGAGCCTCAATTTTTCGTTTTGTCA
LOC_Os08g41910
Target Sequence 
GCAACCAAGGAATTGCCCAAACAATGCATAAGGCATGGATCATCCACTAGGTACGCGAAAAGGAGGCAGGTTGGTGTCCG
ACTTCCAGATGACCCCATATGTGAAGCAATATTGCAAAATCTTGATGAGCCTTTGATCTGCACAAGTGTCAAATCTCTGT
CAGAGGATGAATGGATACTTGACCAGGTTATCATTGCTGATATATATGAGCAACAGGGCCTTGATTTCATTGTCGATGGA
GGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCC
TAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTC
TTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTAC
TCTCAGCTAGACCAGTATATATACTACATGTTGTAAATANGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGAT
TATTTTCAGTNCACTGAGCCTCAATTTTTCGTTTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22451.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis