Browse Element(s) Details


Os.22594.1.S1_at

Description gb:AK064050.1
DB_XREF= gi:32974068
TID=Os.22594.1
CNT=53
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.22594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Bowman Birk tryspin inhibitor (P0037C04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-E08, full insert sequence.
FL= gb:AK064050.1 gb:AK099279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0339011/11Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03320Os.12713.1.S2_a_at11/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.32459.2.S1_x_at6/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320OsAffx.4805.1.S1_at1/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.4653.1.S1_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.37729.1.S1_s_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350NANA1+1347622..1347909hypothetical protein
LOC_Os01g03360Os.37729.1.S1_s_at11/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360Os.32459.2.S1_x_at1/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370OsAffx.10893.1.S1_x_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03370OsAffx.10893.2.S1_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03380OsAffx.22805.1.S1_at7/111+1360512..1361069Bowman-Birk type bran trypsin inhibitor precursor, putative
LOC_Os01g03390Os.22594.1.S1_at11/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03390Os.32459.2.S1_x_at1/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03400OsAffx.10894.1.S1_at11/111+1365693..1366594Ubiquitin ligase sina, putative
LOC_Os01g03410Os.17213.1.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03410OsAffx.25095.5.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03420OsAffx.10592.1.S1_at10/111+1371971..1374044Seven in absentia protein family protein
LOC_Os01g03429OsAffx.23100.1.S1_x_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03429OsAffx.23100.1.S1_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_at8/111+1380448..1381886hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_x_at7/111+1380448..1381886hypothetical protein
LOC_Os01g03452OsAffx.31552.2.S1_at10/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_x_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.3.S1_x_at5/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.1.S1_x_at4/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_x_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.22940.1.S1_s_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452Os.6098.1.A1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.23624.1.S1_at1/111+1383210..1391278hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22594.1.S1_at--116--8551Chr01:1362959..1362983 (25 bp)
TGGAGCCCAGCAAGTGCGTGGCACA
LOC_Os01g03390
Os.22594.1.S1_at--506--9491Chr01:1362782..1362806 (25 bp)
TCTGCCGCTGCAACGACAAGGTGAA
LOC_Os01g03390
Os.22594.1.S1_at--4--71Chr01:1362734..1362758 (25 bp)
ATTGCAAGCGGGTGAAGTCGTCGAA
LOC_Os01g03390
Os.22594.1.S1_at--43--2191Chr01:1362652..1362676 (25 bp)
ACACTCGTGCGAGAACTAGCTGCAG
LOC_Os01g03390
Os.22594.1.S1_at--1063--4031Chr01:1362552..1362576 (25 bp)
CGTTCGATCATTCAGTGTTGCTAGC
LOC_Os01g03390
Os.22594.1.S1_at--1144--6651Chr01:1362536..1362560 (25 bp)
GTTGCTAGCTAGCTCCATATTCAGA
LOC_Os01g03390
Os.22594.1.S1_at--491--131Chr01:1362518..1362542 (25 bp)
ATTCAGAGCTCTGCTATAGCTTGAG
LOC_Os01g03390
Os.22594.1.S1_at--707--1111Chr01:1362493..1362517 (25 bp)
AGTGTTTTGCTGCAACTCGCTTAGC
LOC_Os01g03390
Os.22594.1.S1_at--282--1991Chr01:1362479..1362503 (25 bp)
ACTCGCTTAGCTTAATTACGTGTTT
LOC_Os01g03390
Os.22594.1.S1_at--764--9831Chr01:1362455..1362479 (25 bp)
TAAATTGTGTGTTGTCTCGTGTGAA
LOC_Os01g03390
Os.22594.1.S1_at--776--3771Chr01:1362440..1362464 (25 bp)
CTCGTGTGAACGATGGTCTAGCCAG
LOC_Os01g03390
Target Sequence 
TGGAGCCCAGCAAGTGCGTGGCACAGTGCGAGGTGTGCCAGGAGGCGCCGGGGCCATTCCCGGGCCCGCTCATCTGCAGC
GACGTCTACTGGGGCGCCGACCCGGGTCCCTTCTGCACGCCGCGGCCGTGGGGAGATTGCTGCACCAACACCACCTGCAC
CAGGTCGATCCCGCCGATCTGCCGCTGCAACGACAAGGTGAAGAAGTGCGCCGCCGCGTGCAAGGATTGCAAGCGGGTGA
AGTCGTCGAAGCCTCCTCGCTACGTCTGCCAGGACCAGTTCACCGGCCAGCCAGGGCCCAAGTGCAAACACTCGTGCGAG
AACTAGCTGCAGATCGATATGTATGATCGATCGATCGATCTGTGTCCGTCAATAAAACTCGCCCTAGCTAGCAGCTAGCT
GATCGTTCGTTCGATCATTCAGTGTTGCTAGCTAGCTCCATATTCAGAGCTCTGCTATAGCTTGAGAGTGTTTTGCTGCA
ACTCGCTTAGCTTAATTACGTGTTTAAATTGTGTGTTGTCTCGTGTGAACGATGGTCTAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis