Browse Element(s) Details


Os.22690.2.S1_x_at

Description gb:AK121783.1
DB_XREF= gi:37991406
TID=Os.22690.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094A05, full insert sequence.
FL= gb:AK121783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3834010/11Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38280NANA4+22564337..22565046hypothetical protein
LOC_Os04g38290Os.7262.1.S2_at11/114+22565730..22572172expressed protein
LOC_Os04g38290Os.7262.1.S1_at11/114+22565730..22572172expressed protein
LOC_Os04g38300OsAffx.14186.1.S1_at10/114+22573379..22574840hypothetical protein
LOC_Os04g38300OsAffx.26371.1.S1_at2/114+22573379..22574840hypothetical protein
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22690.2.S1_x_at--1132--4411Chr04:22588168..22588192 (25 bp)
GCCAGTGAACCAACCCACTAATATT
LOC_Os04g38340
Os.22690.2.S1_x_at--480--6571Chr04:22588114..22588138 (25 bp)
GATTCCCGTGCATAGTTTATAACCA
LOC_Os04g38340
Os.22690.2.S1_x_at--75--2871Chr04:22588072..22588096 (25 bp)
AAGTGACTTGGCTGCTTGCTTCCAG
LOC_Os04g38340
Os.22690.2.S1_x_at--561--3671Chr04:22587921..22587945 (25 bp)
CTTTTGTTGTAAATCGGTGACTCCG
LOC_Os04g38340
Os.22690.2.S1_x_at--348--7771Chr04:22587906..22587930 (25 bp)
GGTGACTCCGTGTTAATGAGCTCTT
LOC_Os04g38340
Os.22690.2.S1_x_at--850--691Chr04:22587891..22587915 (25 bp)
ATGAGCTCTTGCTTCTTTGTAGAAC
LOC_Os04g38340
Os.22690.2.S1_x_at--930--10291Chr04:22587859..22587883 (25 bp)
TTTCCTGACTCCGTGTTTTATACAT
LOC_Os04g38340
Os.22690.2.S1_x_at--251--10331Chr04:22587826..22587850 (25 bp)
TTTACTTACCTGTAGCTTTCACATG
LOC_Os04g38340
Os.22690.2.S1_x_at--525--9291Chr04:22587748..22587772 (25 bp)
TCCCCGTTCTCTACAAAGTTTACTG
LOC_Os04g38340
Os.22690.2.S1_x_at--911--3491Chr04:22587679..22587703 (25 bp)
CATGTGACGGTGTGGATGGTATCCC
LOC_Os04g38340
Os.22690.2.S1_x_at--1133--9551Chr04:22587637..22587661 (25 bp)
TCTTTTGCTCCGTCCGTCATAAAAA
NONE
Target Sequence 
GCCAGTGAACCAACCCACTAATATTTCTCATATGCTTTCTGNCTCTGAAACTATTGATTCCCGTGCATAGTTTATAACCA
ACTGGTCATCAAAGTACAAGTGACTTGGCTGCTTGCTTCCAGCAGAAGCTACCTGTAAAGGAAATGGTTCATCTGGTTAT
ANTGCCCTGGGGCAAACGGAGCATTTCAGAGATGCTNAATTTTGTACACCATACCAGGAAACATTTTGTGTAAGCTGCAT
TTTTTTTTTCTTTTGTTGTAAATCGGTGACTCCGTGTTAATGAGCTCTTGCTTCTTTGTAGAACAGAAAATTTTCCTGAC
TCCGTGTTTTATACATCATATTCTTTTACTTACCTGTAGCTTTCACATGCTAGGTAAAAGAATGTGTAATTATTTCGAGG
AAAAGTTTCTTTTCTCCCTTGCTCCCCGTTCTCTACAAAGTTTACTGTAATCGGTAGAAGTCAATGACCATTGTATTAGA
TATAAAGTAACCATGTGACGGTGTGGATGGTATCCCATAATGAATGCACCNATGTCTTTTGCTCCGTCCGTCATAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22690.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis