Browse Element(s) Details


Os.22731.1.S1_at

Description gb:D12635.1
DB_XREF= gi:218250
TID=Os.22731.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22731 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for low molecular weight heat shock protein, complete cds.
PROD=low molecular weight heat shock protein
FL= gb:M80186.1 gb:AK119717.1 gb:AK119243.1 gb:D12635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1602011/1117.4 kDa class I heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16020Os.22731.1.S1_at11/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.57467.1.S1_x_at6/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.37773.1.S1_x_at4/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_x_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.57467.1.S1_x_at5/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.22730.1.S1_at11/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.37773.1.S1_x_at2/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.57467.1.S1_x_at1/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16050Os.11756.1.S1_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050Os.11756.1.S1_s_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16060Os.49668.1.S1_at11/113+8830385..8833479lipase, putative, expressed
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22731.1.S1_at--1159--6431Chr03:8812954..8812978 (25 bp)
GATCACCGGCTAGAGCATTGGGCTA
LOC_Os03g16020
Os.22731.1.S1_at--927--5891Chr03:8812942..8812966 (25 bp)
GAGCATTGGGCTAATCTAAAACGAT
LOC_Os03g16020
Os.22731.1.S1_at--619--9531Chr03:8812928..8812952 (25 bp)
TCTAAAACGATTTATCTGTGGCTTC
LOC_Os03g16020
Os.22731.1.S1_at--548--9471Chr03:8812914..8812938 (25 bp)
TCTGTGGCTTCAAGTGTATCGATCA
LOC_Os03g16020
Os.22731.1.S1_at--449--6911Chr03:8812899..8812923 (25 bp)
GTATCGATCACTTATGTGAGGTGTA
LOC_Os03g16020
Os.22731.1.S1_at--707--7711Chr03:8812880..8812904 (25 bp)
GGTGTAATTACTGGTGTTTTTGGTG
LOC_Os03g16020
Os.22731.1.S1_at--442--10251Chr03:8812862..8812886 (25 bp)
TTTGGTGTGCTCTGGTTCCTTTCAA
LOC_Os03g16020
Os.22731.1.S1_at--832--10671Chr03:8812847..8812871 (25 bp)
TTCCTTTCAAGTGTGTTGTTGCCGC
LOC_Os03g16020
Os.22731.1.S1_at--478--2871Chr03:8812839..8812863 (25 bp)
AAGTGTGTTGTTGCCGCTCGAACTA
LOC_Os03g16020
Os.22731.1.S1_at--127--4811Chr03:8812824..8812848 (25 bp)
GCTCGAACTACTCCGCTATGTAAAA
LOC_Os03g16020
Os.22731.1.S1_at--319--7051Chr03:8812797..8812821 (25 bp)
GTAAAACCTGTTGTCTCATTATGAA
LOC_Os03g16020
Target Sequence 
GATCACCGGCTAGAGCATTGGGCTAATCTAAAACGATTTATCTGTGGCTTCAAGTGTATCGATCACTTATGTGAGGTGTA
ATTACTGGTGTTTTTGGTGTGCTCTGGTTCCTTTCAAGTGTGTTGTTGCCGCTCGAACTACTCCGCTATGTAAAACGGTA
AAACCTGTTGTCTCATTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis