Browse Element(s) Details


Os.22824.1.A1_at

Description gb:AK111242.1
DB_XREF= gi:32996451
TID=Os.22824.1
CNT=9
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.22824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-D02, full insert sequence.
FL= gb:AK111242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4691011/11xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46880OsAffx.22848.3.S1_x_at3/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_x_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46890NANA2+28599792..28602017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46900NANA2+28603749..28606697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46910Os.25564.1.S1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46910Os.22824.1.A1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46920OsAffx.5514.1.S1_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920OsAffx.5514.1.S1_x_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920Os.54539.1.S1_at1/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46930Os.5373.1.S1_at11/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46930OsAffx.2983.1.S1_x_at10/112+28636904..28639748jmjC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22824.1.A1_at--878--7071Chr02:28617261..28617285 (25 bp)
GTCAACCCGGAATTCAGCTAGTACT
LOC_Os02g46910
Os.22824.1.A1_at--787--291Chr02:28617304..28617328 (25 bp)
ATAGCAAGTTGCGTACCAGCCCCAT
LOC_Os02g46910
Os.22824.1.A1_at--907--3311Chr02:28617363..28617387 (25 bp)
CACATGGGCTGTTTGGACTTTCAAG
LOC_Os02g46910
Os.22824.1.A1_at--337--1471Chr02:28617416..28617440 (25 bp)
AGAATAAATGTACCCCTCTCATGTC
LOC_Os02g46910
Os.22824.1.A1_at--769--2011Chr02:28617447..28617471 (25 bp)
ACTCAACAGTCAGTCACCAGTTCAA
LOC_Os02g46910
Os.22824.1.A1_at--1009--3711Chr02:28617550..28617574 (25 bp)
CTACCAGTTAGTCTCCGTGAATGCA
LOC_Os02g46910
Os.22824.1.A1_at--219--5271Chr02:28617568..28617592 (25 bp)
GAATGCACGGGTCACTTAATACAAC
LOC_Os02g46910
Os.22824.1.A1_at--254--5191Chr02:28617641..28617665 (25 bp)
GCAATGCAGGTGTTTGTTCCAACTA
LOC_Os02g46910
Os.22824.1.A1_at--545--2471Chr02:28617665..28617689 (25 bp)
AACACATTATGGCTTTCGATCGATC
LOC_Os02g46910
Os.22824.1.A1_at--879--6371Chr02:28617682..28617706 (25 bp)
GATCGATCCTAACGGTTTTGTTCGT
LOC_Os02g46910
Os.22824.1.A1_at--977--6991Chr02:28617707..28617731 (25 bp)
GTACGTCGTCATTTGCAGCTGTCAA
LOC_Os02g46910
Target Sequence 
GTCAACCCGGAATTCAGCTAGTACTACAGTAGTAGTACAAACCATAGCAAGTTGCGTACCAGCCCCATGCCCTGGTGGCG
CAGGGTAGACAGCAGGGCGAGCCACATGGGCTGTTTGGACTTTCAAGCCCAAAAAGGCTGCGCCGCCTGCACCCGAGAAT
AAATGTACCCCTCTCATGTCACGCGCACTCAACAGTCAGTCACCAGTTCAACCACCATTGATCACCCCTCACCAAAACGT
ACTTATACTGAATTAGTCGAGCACGACGCGTACAACAACAGGAGTACTCCTACCAGTTAGTCTCCGTGAATGCACGGGTC
ACTTAATACAACGCCGTGGTAGATGGAATATTCAACGGTTCCGTAGTTTTTTCTTGCGTTGCAATGCAGGTGTTTGTTCC
AACTAACACATTATGGCTTTCGATCGATCCTAACGGTTTTGTTCGTGTACGTCGTCATTTGCAGCTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22824.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis