Browse Element(s) Details


Os.22916.1.A1_at

Description gb:CB684235
DB_XREF= gi:29687960
DB_XREF=OSJNEf13I15.r
CLONE=OSJNEf13I15
TID=Os.22916.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22916 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172851.1 (A.thaliana) putative pattern formation protein EMB30; This gene structure is inaccurate, likely due to discrepancies within overlapping bac sequences. This will be resolved asap. In the meantime, an either full or partial translation is provided. (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2209011/11Pattern formation protein EMB30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22060Os.10001.1.S1_at11/112+13119920..13127002expressed protein
LOC_Os02g22060Os.17662.1.S1_at1/112+13119920..13127002expressed protein
LOC_Os02g22070OsAffx.2716.1.S1_at8/112+13127053..13132578expressed protein
LOC_Os02g22070Os.24578.1.A1_at5/112+13127053..13132578expressed protein
LOC_Os02g22080NANA2+13133206..13137031transposon protein, putative, Mutator sub-class
LOC_Os02g22090Os.22916.1.A1_at11/112+13144842..13149932Pattern formation protein EMB30, putative, expressed
LOC_Os02g22100Os.11736.1.S1_at10/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22100Os.51832.1.S1_at1/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22110OsAffx.12154.1.S1_at9/112+13164480..13164761hypothetical protein
LOC_Os02g22120OsAffx.12155.2.A1_at11/112+13169859..13171845hypothetical protein
LOC_Os02g22130Os.8901.1.S1_at11/112+13173638..13176600expressed protein
LOC_Os02g22130Os.8901.1.S2_at11/112+13173638..13176600expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007047biological_processcell wall organization and biogenesis
GO:0007155biological_processcell adhesion
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009880biological_processembryonic pattern specification
GO:0009942biological_processlongitudinal axis specification
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22916.1.A1_at--605--4851Chr02:13149341..13149365 (25 bp)
GCTACTGAAGAACATACTGCTGGTG
LOC_Os02g22090
Os.22916.1.A1_at--58--10711Chr02:13149451..13149475 (25 bp)
TTGCACCTTCACTGCAGCCAGAAGT
LOC_Os02g22090
Os.22916.1.A1_at--558--1691Chr02:13149466..13149490 (25 bp)
AGCCAGAAGTTTTTCCTGACAGTGA
LOC_Os02g22090
Os.22916.1.A1_at--352--291Chr02:13149529..13149553 (25 bp)
ATAGTCCAGCACAATCTGAAGGCGT
LOC_Os02g22090
Os.22916.1.A1_at--220--5291Chr02:13149546..13149570 (25 bp)
GAAGGCGTGAATGTTTAGCTCAACA
LOC_Os02g22090
Os.22916.1.A1_at--548--7451Chr02:13149638..13149662 (25 bp)
GTGTCCTTACATTCTTTAGCTGCCA
LOC_Os02g22090
Os.22916.1.A1_at--832--9551Chr02:13149650..13149674 (25 bp)
TCTTTAGCTGCCACTCTTTGAGAAA
LOC_Os02g22090
Os.22916.1.A1_at--866--2511Chr02:13149685..13149709 (25 bp)
AACTTCCGTGCATGTGTAATTTCCA
LOC_Os02g22090
Os.22916.1.A1_at--495--7391Chr02:13149742..13149766 (25 bp)
GTGATACCATTAGCTTGTTCTTCTG
LOC_Os02g22090
Os.22916.1.A1_at--77--7511Chr02:13149779..13149803 (25 bp)
GTGGTTTTCCTGTTGCTTTATATAC
LOC_Os02g22090
Os.22916.1.A1_at--276--4311Chr02:13149834..13149858 (25 bp)
CCTAGTTTTTCTGGGACATGTGTAC
LOC_Os02g22090
Target Sequence 
GCTACTGAAGAACATACTGCTGGTGCTAAAAGCAAATCGGGTTTTATCAAAGACAAGCACCAGTGAAGAGAACAGTTTGT
GGGAAGCNACATGGCTTCNAGTTAACAAGANTTGCACCTTCACTGCAGCCAGAAGTTTTTCCTGACAGTGAGGGTGATGT
AGCAACACAAAGTGCAAAAAACAAGTCAGATAGTCCAGCACAATCTGAAGGCGTGAATGTTTAGCTCAACATAATAACTC
CAGTAAATTGGTTATATTATGCCAGAACTNNNNNNAATTTGAAATGTGGATGTATATTGTGTCCTTACATTCTTTAGCTG
CCACTCTTTGAGAAACAAAACATACAACTTCCGTGCATGTGTAATTTCCATTGATCTAAATGGTGAAATTAAACATTAGA
ATGTGATACCATTAGCTTGTTCTTCTGGGATATGTGGTAGTGGTTTTCCTGTTGCTTTATATACATATGTTATGAACCAT
TTGTTTAAAATTTCCCTAGTTTTTCTGGGACATGTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22916.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis