Browse Element(s) Details


Os.23030.1.S1_at

Description gb:AK060509.1
DB_XREF= gi:32970527
TID=Os.23030.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D01, full insert sequence.
FL= gb:AK060509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3349010/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33464NANA9+19723592..19723891hypothetical protein
LOC_Os09g33470Os.17268.1.S1_at10/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.26471.1.S1_at2/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.12779.1.S1_at1/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33480Os.20016.1.S1_at8/119+19736709..19739784expressed protein
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23030.1.S1_at--416--3291NONE
CAAAGCGCGGGAACCATAGTTGCAT
NONE
Os.23030.1.S1_at--879--1731Chr09:19749922..19749941 (20 bp)
ACCATAGTTGCATGGCTCAGCCAGG
LOC_Os09g33490
Os.23030.1.S1_at--554--7491Chr09:19749949..19749973 (25 bp)
GTGGTGTGCCGGATTTTTCTGAAGA
LOC_Os09g33490
Os.23030.1.S1_at--117--2131Chr09:19749977..19750001 (25 bp)
ACAGGTCATCAAGAAGGCGAGCCGG
LOC_Os09g33490
Os.23030.1.S1_at--577--3891Chr09:19750083..19750107 (25 bp)
CTGTGTCACGGCTGAGGTTTCAGAC
LOC_Os09g33490
Os.23030.1.S1_at--727--7531Chr09:19750133..19750157 (25 bp)
GTGGCAGCATCAATGGTGCTCCATC
LOC_Os09g33490
Os.23030.1.S1_at--357--8411Chr09:19750173..19750197 (25 bp)
GGCCTAGACATGCTGAAAATCTCCT
LOC_Os09g33490
Os.23030.1.S1_at--466--10551Chr09:19750236..19750260 (25 bp)
TTCTTGTTCTCTTTTGTCCCTCCAT
LOC_Os09g33490
Os.23030.1.S1_at--619--71Chr09:19750259..19750283 (25 bp)
ATTGCTTTTCCTGTACTTCTCCTTG
LOC_Os09g33490
Os.23030.1.S1_at--959--2051Chr09:19750273..19750297 (25 bp)
ACTTCTCCTTGTACCATAATGATTA
LOC_Os09g33490
Os.23030.1.S1_at--733--7891Chr09:19750322..19750346 (25 bp)
GGTTGAAGAGAGAAGCCCCAGCTTA
LOC_Os09g33490
Target Sequence 
CAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCA
TCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCC
GTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCA
ATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTT
TTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAG
TTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis