Browse Element(s) Details


Os.2313.1.S1_at

Description gb:AF150113.1
DB_XREF= gi:5107213
GEN=TIM9
TID=Os.2313.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2313 (NCBI UniGene Cluster)
DEF=Oryza sativa small zinc finger-like protein (TIM9) mRNA, complete cds.
PROD=small zinc finger-like protein
FL= gb:AK120784.1 gb:AF150113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3831010/11Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38250OsAffx.7830.1.S1_at11/1112+23458352..23459049expressed protein
LOC_Os12g38260Os.53836.1.S1_at11/1112+23460907..23465702expressed protein
LOC_Os12g38270Os.9279.1.S1_at11/1112+23467876..23468826Metallothionein-like protein 1, putative, expressed
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38290OsAffx.32080.1.S1_at11/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38290Os.17004.1.S1_at1/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein
LOC_Os12g38330NANA12+23490722..23491093expressed protein
LOC_Os12g38340Os.50144.1.S1_at11/1112+23492984..23493616expressed protein
LOC_Os12g38350NANA12+23496846..23497298expressed protein
LOC_Os12g38360Os.5757.1.S1_at10/1112+23499024..23499651expressed protein
LOC_Os12g38370OsAffx.32082.1.S1_at11/1112+23505656..23506057expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2313.1.S1_at--27--9231NONE
TCCAGATCCGCGATAGTTTGAGAAT
NONE
Os.2313.1.S1_at--803--5951Chr12:23484438..23484462 (25 bp)
GAGAATGTACAACTCCCTCGTGGAA
LOC_Os12g38310
Os.2313.1.S1_at--415--2591Chr12:23484461..23484485 (25 bp)
AACGATGCTTCACAGACTGCGTGGA
LOC_Os12g38310
Os.2313.1.S1_at--1004--9131Chr12:23484478..23484502 (25 bp)
TGCGTGGACACTTTCCGCCGGAAGA
LOC_Os12g38310
Os.2313.1.S1_at--604--4471Chr12:23484494..23484518 (25 bp)
GCCGGAAGACCCTCGACAAGCAAGA
LOC_Os12g38310
Os.2313.1.S1_at--730--2731Chr12:23484511..23484535 (25 bp)
AAGCAAGAGGAATCCTGCGTCCGCC
LOC_Os12g38310
Os.2313.1.S1_at--876--4151Chr12:23484532..23484556 (25 bp)
CGCCGCTGCGCTGAGAAGTTCCTGA
LOC_Os12g38310
Os.2313.1.S1_at--819--6691Chr12:23484549..23484573 (25 bp)
GTTCCTGAAGCACTCCATGAGGGTT
LOC_Os12g38310
Os.2313.1.S1_at--850--8891Chr12:23484588..23484612 (25 bp)
TGAGCTTAACCAGGGTGTTGCCACA
LOC_Os12g38310
Os.2313.1.S1_at--477--6691Chr12:23484604..23484628 (25 bp)
GTTGCCACACCTGACTAATCAATTG
LOC_Os12g38310
Os.2313.1.S1_at--910--10531Chr12:23484637..23484661 (25 bp)
TTCTAACGTTGGCAATTTTGTCAGC
LOC_Os12g38310
Target Sequence 
TCCAGATCCGCGATAGTTTGAGAATGTACAACTCCCTCGTGGAACGATGCTTCACAGACTGCGTGGACACTTTCCGCCGG
AAGACCCTCGACAAGCAAGAGGAATCCTGCGTCCGCCGCTGCGCTGAGAAGTTCCTGAAGCACTCCATGAGGGTTGGCAT
GAGATTTGCTGAGCTTAACCAGGGTGTTGCCACACCTGACTAATCAATTGGGTTTGGTTTCTAACGTTGGCAATTTTGTC
AGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis