Browse Element(s) Details


Os.23156.1.S1_at

Description gb:AK073508.1
DB_XREF= gi:32983531
TID=Os.23156.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.23156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044O22, full insert sequence.
FL= gb:AK073508.1 gb:AK103982.1 gb:AK061078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0232011/11Serine carboxypeptidase III precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02270Os.4816.1.S1_at8/112+743352..745314expressed protein
LOC_Os02g02290Os.12135.1.S1_at11/112+748714..759273SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed
LOC_Os02g02320Os.23156.1.S1_at11/112+767270..772120Serine carboxypeptidase III precursor, putative, expressed
LOC_Os02g02330NANA2+774907..775182hypothetical protein
LOC_Os02g02340Os.10244.1.S1_s_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.24066.1.S1_x_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.3584.1.S1_x_at1/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02350Os.14099.1.S1_a_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50684.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50679.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50682.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50680.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50681.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02360Os.8955.1.S1_at10/112+785945..789227expressed protein
LOC_Os02g02370OsAffx.2486.1.S1_at11/112+789597..791081Transcription factor MYB86, putative
LOC_Os02g02380NANA2+795066..796280photomorphogenesis repressor protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23156.1.S1_at--653--2511Chr02:769037..769061 (25 bp)
AACTTGGAAGTTGGCATCCCAGCTC
LOC_Os02g02320
Os.23156.1.S1_at--789--6891Chr02:768084..768108 (25 bp)
GTATCATCTCATGAATCGCCATTTG
LOC_Os02g02320
Os.23156.1.S1_at--694--7691Chr02:768039..768063 (25 bp)
GGTGTTTTGAAGAGCCACGGGCCAC
LOC_Os02g02320
Os.23156.1.S1_at--168--7791Chr02:767604..767628 (25 bp)
GGTCCACAATGCTGGTCACATGGTT
LOC_Os02g02320
Os.23156.1.S1_at--605--5911Chr02:767501..767525 (25 bp)
GAGCTTCCTGAGCAACCGATGTATG
LOC_Os02g02320
Os.23156.1.S1_at--111--2631Chr02:767488..767512 (25 bp)
AACCGATGTATGCTGCGATGTGATA
LOC_Os02g02320
Os.23156.1.S1_at--178--6931Chr02:767437..767461 (25 bp)
GTAGTTTGAGTTGCCGTTTCACGGA
LOC_Os02g02320
Os.23156.1.S1_at--1151--6811Chr02:767422..767446 (25 bp)
GTTTCACGGAGTGCCTGAAGCTTCA
LOC_Os02g02320
Os.23156.1.S1_at--475--8991Chr02:767407..767431 (25 bp)
TGAAGCTTCATGTTTCCTTTTTTAC
LOC_Os02g02320
Os.23156.1.S1_at--560--3751Chr02:767381..767405 (25 bp)
CTCTTTCTTTTTCCCAATGTATCAA
LOC_Os02g02320
Os.23156.1.S1_at--441--2331Chr02:767311..767335 (25 bp)
AAAGTTCCACTCATGTACACTGCAA
LOC_Os02g02320
Target Sequence 
AACTTGGAAGTTGGCATCCCAGCTCTACTTGAGGATGGGATCAATGTGCTTATATATGCTGGAGAGTATGATCTTATATG
CAATTGGCTTGGAAACTCGAGGTGGGTCCACTCGATGGAATGGTCTGGCCAGAAAGACTTTGTATCATCTCATGAATCGC
CATTTGTAGTAGATGGTGCCGAAGCTGGTGTTTTGAAGAGCCACGGGCCACTCAGCTTCCTCAAGGTCCACAATGCTGGT
CACATGGTTCCAATGGACCAACCCAAAGCTTCCCTGGAAATGCTGAGGAGATTTACTCAAGGGAAACTCAAGGAGGAATG
GCTTGCCGAGCTTCCTGAGCAACCGATGTATGCTGCGATGTGATAAAAATACAACTGAAATAGTCTAATAGGTAGTTTGA
GTTGCCGTTTCACGGAGTGCCTGAAGCTTCATGTTTCCTTTTTTACCCTCTTTCTTTTTCCCAATGTATCAACTGAATGC
ATAATTCTGAAAATAACGTTGGAACCGCGATGTAACTAAAGTTCCACTCATGTACACTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis