Browse Element(s) Details


Os.23216.1.S1_at

Description gb:AK102706.1
DB_XREF= gi:32987915
TID=Os.23216.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0022B05.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104A05, full insert sequence.
FL= gb:AK102706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0299011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23216.1.S1_at--479--3111Chr07:1114161..1114185 (25 bp)
AATTTTAGATGATATAGGGCTCGTT
LOC_Os07g02990
Os.23216.1.S1_at--665--10071Chr07:1114175..1114199 (25 bp)
TAGGGCTCGTTTAGTAGAGCTCCAA
LOC_Os07g02990
Os.23216.1.S1_at--1100--6531Chr07:1114238..1114262 (25 bp)
GTTATGGAGCCGTTTAAACCCAGCT
LOC_Os07g02990
Os.23216.1.S1_at--732--3571Chr07:1114277..1114301 (25 bp)
CATTTTATGAGAGAGTTCCATTCAG
LOC_Os07g02990
Os.23216.1.S1_at--81--1571Chr07:1114365..1114389 (25 bp)
AGCTAGTGCTAGTCAGGAAATCAGA
LOC_Os07g02990
Os.23216.1.S1_at--152--8051Chr07:1114440..1114464 (25 bp)
GGAGATAATATCTAAGTCATTCGGA
LOC_Os07g02990
Os.23216.1.S1_at--671--2831Chr07:1114453..1114477 (25 bp)
AAGTCATTCGGAGTTAACTGATATG
LOC_Os07g02990
Os.23216.1.S1_at--994--10074Chr07:1114518..1114542 (25 bp)
TAGTGGTCTGCTCTTTCTTGACCTC
LOC_Os07g02990
Os.23216.1.S1_at--542--10312Chr07:1114531..1114555 (25 bp)
TTTCTTGACCTCTGTAACTGCTTCT
LOC_Os07g02990
Os.23216.1.S1_at--769--7054Chr07:1114544..1114568 (25 bp)
GTAACTGCTTCTCCTTCTAATATAT
LOC_Os07g02990
Os.23216.1.S1_at--594--3658Chr11:8585434..8585453 (20 bp)
CTTCTCCTTCTAATATATCCGGCAG
NONE
Target Sequence 
AATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTT
ATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGT
GGAGCTAAAACTGTTTGGCTGAGCTCTAGCTNNCTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGA
AGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGA
AATGTGTGCTACATAAAAATGAAAACTGAAAATGTCNCCTAGTGGTCTGCTCTTTCTTGACCTCTGTAACTGCTTCTCCT
TCTAATATATCCGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis