Browse Element(s) Details


Os.23217.1.S1_s_at

Description gb:D42640
DB_XREF= gi:3106909
DB_XREF=D42640
CLONE=NH003
TID=Os.23217.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23217 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_178175.1 (A.thaliana) putative acetylornithine transaminase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0383011/11Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03790OsAffx.26720.1.S1_at11/115+1660031..1660321hypothetical protein
LOC_Os05g03800OsAffx.14528.1.S1_x_at11/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.1.S1_at10/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.2.S1_x_at6/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_x_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800Os.5212.1.S1_at1/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03810NANA5+1673273..1675282trehalose-phosphatase family protein
LOC_Os05g03820Os.12568.2.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_x_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_x_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830Os.23217.1.S1_s_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03840OsAffx.4243.1.S1_at11/115+1685199..1687100Glycosyl hydrolase family 9 protein
LOC_Os05g03850NANA5+1694722..1694979retrotransposon protein, putative, unclassified
LOC_Os05g03860Os.3373.1.S1_at11/115+1695736..1697113bZIP transcription factor family protein, expressed
LOC_Os05g03870Os.54175.1.S1_at11/115+1698490..1699237expressed protein
LOC_Os05g03884OsAffx.2978.2.S1_s_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03884Os.4162.1.S1_at11/115+1702540..1708864KNOX2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23217.1.S1_s_at--404--4311Chr05:1684736..1684760 (25 bp)
CCTTTGGTTGATGCGTGCTTGGATC
LOC_Os05g03830
Os.23217.1.S1_s_at--823--10231Chr05:1684738..1684762 (25 bp)
TTTGGTTGATGCGTGCTTGGATCGC
LOC_Os05g03830
Os.23217.1.S1_s_at--379--7391Chr05:1684799..1684823 (25 bp)
GTGAGGCTGGTGCCGCCACTCATCA
LOC_Os05g03830
Os.23217.1.S1_s_at--375--9171Chr05:1684809..1684833 (25 bp)
TGCCGCCACTCATCATCTCGGAAAA
LOC_Os05g03830
Os.23217.1.S1_s_at--903--411Chr05:1684820..1684844 (25 bp)
ATCATCTCGGAAAAGGAGCTTGAGC
LOC_Os05g03830
Os.23217.1.S1_s_at--1156--3831Chr05:1684848..1684872 (25 bp)
CTGCAGAGGTGATAAGGGACTGTCT
LOC_Os05g03830
Os.23217.1.S1_s_at--266--6451Chr05:1684858..1684882 (25 bp)
GATAAGGGACTGTCTACCTGCACTT
LOC_Os05g03830
Os.23217.1.S1_s_at--268--2891Chr05:1684861..1684885 (25 bp)
AAGGGACTGTCTACCTGCACTTGAT
LOC_Os05g03830
Os.23217.1.S1_s_at--795--7631Chr05:1684863..1684887 (25 bp)
GGGACTGTCTACCTGCACTTGATGC
LOC_Os05g03830
Os.23217.1.S1_s_at--628--8671Chr05:1685012..1685036 (25 bp)
TGTGTGCCATAGGTCTACTTGTCGA
LOC_Os05g03830
Os.23217.1.S1_s_at--255--7291Chr05:1685015..1685039 (25 bp)
GTGCCATAGGTCTACTTGTCGAATC
LOC_Os05g03830
Target Sequence 
CCTTTGGTTGATGCGTGCTTGGATCGCGGTGTCATAGTGCTGACAGCTGGTAAAGGCAATGTTGTGAGGCTGGTGCCGCC
ACTCATCATCTCGGAAAAGGAGCTTGAGCAGGCTGCAGAGGTGATAAGGGACTGTCTACCTGCACTTGATGCNTCTACCT
CTTAATGTAAGCAACATCNTTAGCAATGGAGGCTAGAATGATCTNNNCCTTTNNNGANGACCNTTAGCAATGGATGTTAG
AATGAACNTCCCNTTTGNNTGGAAGTTCAGATATANTGTGTGCCATAGGTCTACTTGTCGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23217.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis