Browse Element(s) Details


Os.23270.1.S1_at

Description gb:AK072155.1
DB_XREF= gi:32982178
TID=Os.23270.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132P19, full insert sequence.
FL= gb:AK072155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3784011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37810NANA10+19905699..19909455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.14491.2.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.47463.1.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23270.1.S1_at--590--5011Chr10:19932515..19932539 (25 bp)
GCAGGTGATCTCAACGGTAACTGAT
LOC_Os10g37840
Os.23270.1.S1_at--85--2571Chr10:19932533..19932557 (25 bp)
AACTGATCGAGTGAGCTCGCGCTGC
LOC_Os10g37840
Os.23270.1.S1_at--539--4571Chr10:19932551..19932575 (25 bp)
GCGCTGCACTGCAACTGAAAGCCTG
LOC_Os10g37840
Os.23270.1.S1_at--178--5991Chr10:19932611..19932635 (25 bp)
GAGACAGTGACATTCGCGTGCAACG
LOC_Os10g37840
Os.23270.1.S1_at--990--7331Chr10:19932628..19932652 (25 bp)
GTGCAACGTACTACTCCTGCTTAAC
LOC_Os10g37840
Os.23270.1.S1_at--960--4891Chr10:19932646..19932670 (25 bp)
GCTTAACCTCTGGAGTAGGGCATCA
LOC_Os10g37840
Os.23270.1.S1_at--728--411Chr10:19932667..19932691 (25 bp)
ATCATCAAGCATTAATCGCCTCCTT
LOC_Os10g37840
Os.23270.1.S1_at--556--7011Chr10:19932820..19932844 (25 bp)
GTACTACGCACTATGGAGACTTTGG
LOC_Os10g37840
Os.23270.1.S1_at--822--5271Chr10:19932868..19932892 (25 bp)
GAATGGACGGCACTACGGTCTACGA
LOC_Os10g37840
Os.23270.1.S1_at--514--9951Chr10:19932888..19932912 (25 bp)
TACGACAAATCTGGCGTGGCACCAT
LOC_Os10g37840
Os.23270.1.S1_at--901--3531Chr10:19932945..19932969 (25 bp)
CATAGCCATATGTCCGGGTGTTTTT
LOC_Os10g37840
Target Sequence 
GCAGGTGATCTCAACGGTAACTGATCGAGTGAGCTCGCGCTGCACTGCAACTGAAAGCCTGGGGATTGTTACTGATTGGC
GATGGACCTGGAGACAGAGACAGTGACATTCGCGTGCAACGTACTACTCCTGCTTAACCTCTGGAGTAGGGCATCATCAA
GCATTAATCGCCTCCTTTCCAACACGTACAATTACCCCCTTGGAAATCAATCAGCTGGGGCATTCAGATGGATAAAATCA
AGAATTGTTTGGCTGAGGAATTTCACGAAGAACACCAAATGTTTGTTTGGATTAGGAGAAGTACAGTACTACGCACTATG
GAGACTTTGGACAGGAAAACAAGGTTCGCCTTGGAATGGACGGCACTACGGTCTACGACAAATCTGGCGTGGCACCATCT
CCGATCAGCCATTTCTGAATTCAAAAAACACATAGCCATATGTCCGGGTGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis