Browse Element(s) Details


Os.23308.1.A1_at

Description gb:AK069483.1
DB_XREF= gi:32979507
TID=Os.23308.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020K23, full insert sequence.
FL= gb:AK069483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1541011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein
LOC_Os03g15420Os.51890.1.S1_at11/113+8413842..8416248dynamin family protein, putative, expressed
LOC_Os03g15430Os.21461.1.S1_at10/113+8416414..8420959Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g15440Os.54743.1.S1_at11/113+8437184..8440119Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23308.1.A1_at--253--131Chr03:8411694..8411718 (25 bp)
ATTCAGCATAGCACATGCCTCTTAT
LOC_Os03g15410
Os.23308.1.A1_at--967--2491Chr03:8411723..8412077 (25 bp)
AACATGTGATTACCGTAGCTTGCTA
LOC_Os03g15410
Os.23308.1.A1_at--1130--4871Chr03:8412074..8412098 (25 bp)
GCTATTGATTTAGTGGATCGGCTTT
LOC_Os03g15410
Os.23308.1.A1_at--276--9451Chr03:8412091..8412115 (25 bp)
TCGGCTTTGGTGAGTCGATCGGAAT
LOC_Os03g15410
Os.23308.1.A1_at--1122--791Chr03:8412169..8412193 (25 bp)
ATGGGAGGTTTTGCTCATTTTGCCG
LOC_Os03g15410
Os.23308.1.A1_at--1056--3571Chr03:8412184..8412208 (25 bp)
CATTTTGCCGGTGGCACGGAAGCAA
LOC_Os03g15410
Os.23308.1.A1_at--672--5371Chr03:8412202..8412226 (25 bp)
GAAGCAAAGCCTCTTCCTTTTGTTT
LOC_Os03g15410
Os.23308.1.A1_at--673--5591Chr03:8412266..8412290 (25 bp)
GAAATCATTAGTCCTTCCAAAGCTG
LOC_Os03g15410
Os.23308.1.A1_at--30--8031Chr03:8412380..8412404 (25 bp)
GGAGGATCTATTATTTATTCTCTTC
LOC_Os03g15410
Os.23308.1.A1_at--434--8211Chr03:8412446..8412470 (25 bp)
GGAATGTGCATGAGTTTGTCCTGTT
LOC_Os03g15410
Os.23308.1.A1_at--239--10111Chr03:8412491..8412515 (25 bp)
TATGGTTGGTACGTGCGGTTTGTTC
LOC_Os03g15410
Target Sequence 
ATTCAGCATAGCACATGCCTCTTATATATAACATGTGATTACCGTAGCTTGCTATTGATTTAGTGGATCGGCTTTGGTGA
GTCGATCGGAATGATCTGAAGTACTTGGTTGGTGATGGTACCTTTGAAAGATAATGGCTGATTTCATGGGAGGTTTTGCT
CATTTTGCCGGTGGCACGGAAGCAAAGCCTCTTCCTTTTGTTTNTGGTCCAGCATTGCCGGCTTTNTGATGTGGTAGTTG
TAGAAATCATTAGTCCTTCCAAAGCTGCNCAATGTTGAATNATNGGTGCCAGCTTNGGATGTATGCNCAACTTAGGGGAA
AAAAANAAAAGGTAAAGTTNGTNTGAGTGGAGATGTGGAGGATCTATTATTTATTCTCTTCNTTTTTTTTTNTTCAATTT
TNANAATTGTTTGTGCANAGGTAGGAATGTGCATGAGTTTGTCCTGTTNTGTATGAGGTTGTAGCTTGTATGGTTGGTAC
GTGCGGTTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23308.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis