Browse Element(s) Details


Os.23349.1.S1_x_at

Description gb:AK067375.1
DB_XREF= gi:32977393
TID=Os.23349.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104L22, full insert sequence.
FL= gb:AK067375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0619011/113'-5' exonuclease family protein, expressed
LOC_Os11g222101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06139Os.8900.1.S1_a_at11/113+3055038..3065100ABC transporter family protein, putative, expressed
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23349.1.S1_x_at--595--9832Chr11:12265075..12265094 (20 bp)
TAAATCCTATCCAGCCTTTTACTAC
LOC_Os11g22210
Os.23349.1.S1_x_at--233--6631Chr03:3088383..3088407 (25 bp)
GTTGGGTACGGCTTTCAATCAATAA
LOC_Os03g06190
Os.23349.1.S1_x_at--700--2531Chr03:3088412..3088436 (25 bp)
AACTATGGCGGGAACAGCACAGTCT
LOC_Os03g06190
Os.23349.1.S1_x_at--292--1491Chr03:3088427..3088451 (25 bp)
AGCACAGTCTCCTACTGGCAATAAG
LOC_Os03g06190
Os.23349.1.S1_x_at--219--7971Chr03:3088457..3088481 (25 bp)
GGATCTCCAGAACCCTAGAAGACGT
LOC_Os03g06190
Os.23349.1.S1_x_at--42--10031Chr03:3088472..3088496 (25 bp)
TAGAAGACGTCAATCTTTCCCACCT
LOC_Os03g06190
Os.23349.1.S1_x_at--166--9311Chr03:3088489..3088513 (25 bp)
TCCCACCTTCCGGTAACATAAGTGA
LOC_Os03g06190
Os.23349.1.S1_x_at--663--7071Chr03:3088523..3088547 (25 bp)
GTAATTGCTCTGATGTATGCCTTCA
LOC_Os03g06190
Os.23349.1.S1_x_at--679--591Chr03:3088539..3088563 (25 bp)
ATGCCTTCAAATTCATCCTTCTGTG
LOC_Os03g06190
Os.23349.1.S1_x_at--65--5551Chr03:3088587..3088611 (25 bp)
GAAACTGGGCTGTTTTTATCCGTGC
LOC_Os03g06190
Os.23349.1.S1_x_at--961--1411Chr03:3088623..3088647 (25 bp)
AGAAACTATGCCTCCCTCAGATTTT
LOC_Os03g06190
Target Sequence 
TAAATCCTATCCAGCCTTTTACTACCCCCAGCTTCCACAATATAGCCCTGAAGTTGGGTACGGCTTTCAATCAATAAACC
GAACTATGGCGGGAACAGCACAGTCTCCTACTGGCAATAAGGAGAGGGATCTCCAGAACCCTAGAAGACGTCAATCTTTC
CCACCTTCCGGTAACATAAGTGATACACACCAGTAATTGCTCTGATGTATGCCTTCAAATTCATCCTTCTGTGCAGAAAA
TAGCTGTAGAGAAATGGAAACTGGGCTGTTTTTATCCGTGCCCCCTAATATGAGAAACTATGCCTCCCTCAGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23349.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis