Browse Element(s) Details


Os.23349.2.S1_at

Description gb:AK070248.1
DB_XREF= gi:32980272
TID=Os.23349.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041O06, full insert sequence.
FL= gb:AK070248.1 gb:AK058261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g061907/113'-5' exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06139Os.8900.1.S1_a_at11/113+3055038..3065100ABC transporter family protein, putative, expressed
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23349.2.S1_at--100--5651Chr03:3088834..3088858 (25 bp)
GACAGAAATGAACACATAGCATCGA
LOC_Os03g06190
Os.23349.2.S1_at--151--5511Chr03:3088843..3088867 (25 bp)
GAACACATAGCATCGATGTCTCTTT
LOC_Os03g06190
Os.23349.2.S1_at--604--3311Chr03:3088846..3088870 (25 bp)
CACATAGCATCGATGTCTCTTTTCT
LOC_Os03g06190
Os.23349.2.S1_at--633--291Chr03:3088849..3088873 (25 bp)
ATAGCATCGATGTCTCTTTTCTTTA
LOC_Os03g06190
Os.23349.2.S1_at--379--1531Chr03:3088851..3088875 (25 bp)
AGCATCGATGTCTCTTTTCTTTATT
LOC_Os03g06190
Os.23349.2.S1_at--1068--4971Chr03:3088852..3088876 (25 bp)
GCATCGATGTCTCTTTTCTTTATTT
LOC_Os03g06190
Os.23349.2.S1_at--259--3551Chr03:3088853..3088877 (25 bp)
CATCGATGTCTCTTTTCTTTATTTT
LOC_Os03g06190
Os.23349.2.S1_at--605--10371NONE
TTTTCTTTGGACAGCATGCATTGAA
NONE
Os.23349.2.S1_at--284--9551NONE
TCTTTGGACAGCATGCATTGAATTA
NONE
Os.23349.2.S1_at--93--8531NONE
TGGACAGCATGCATTGAATTATTTG
NONE
Os.23349.2.S1_at--553--2151NONE
ACAGCATGCATTGAATTATTTGCCA
NONE
Target Sequence 
GACAGAAATGAACACATAGCATCGATGTCTCTTTTCTTTATTTTTTTCTTTGGACAGCATGCATTGAATTATTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23349.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis