Browse Element(s) Details


Os.23351.1.A1_at

Description gb:CB620644
DB_XREF= gi:29615632
DB_XREF=OSIIEa06A02.r
CLONE=OSIIEa06A02
TID=Os.23351.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23351 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0900011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08970Os.54219.1.S1_at11/115+4943452..4949049Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os05g08980Os.10806.1.S1_at11/115+4949582..4954534expressed protein
LOC_Os05g08990Os.12172.1.S1_at11/115+4954769..4959839Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os05g09000Os.23351.1.A1_at11/115+4961618..4964933expressed protein
LOC_Os05g09010Os.40360.1.S1_at9/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.2.S1_x_at7/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40360.1.S1_x_at6/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.5.S1_x_at3/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.4.S1_x_at2/115+4970285..4973033hypothetical protein
LOC_Os05g09020OsAffx.14605.1.S1_s_at11/115+4976301..4977646WRKY transcription factor 50, putative, expressed
LOC_Os05g09020OsAffx.14605.1.S1_at2/115+4976301..4977646WRKY transcription factor 50, putative, expressed
LOC_Os05g09030NANA5+4987026..4990261transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23351.1.A1_at--1143--1331Chr05:4962107..4962131 (25 bp)
AGAGTACCTTAGCTGGGATCCATGA
LOC_Os05g09000
Os.23351.1.A1_at--933--5551Chr05:4962013..4962037 (25 bp)
GAAAGAAATCCCACTGACACCTGCT
LOC_Os05g09000
Os.23351.1.A1_at--731--8951Chr05:4961999..4962023 (25 bp)
TGACACCTGCTGATAGACTCTCAGT
LOC_Os05g09000
Os.23351.1.A1_at--97--5711Chr05:4961984..4962008 (25 bp)
GACTCTCAGTTGGAATTTGCCTTTG
LOC_Os05g09000
Os.23351.1.A1_at--880--1511Chr05:4961899..4961923 (25 bp)
AGCTTGGGCCCATAAGTTCTTATCT
LOC_Os05g09000
Os.23351.1.A1_at--550--5871Chr05:4961868..4961892 (25 bp)
GAGCCTGGATCCTTATAGTCTGATA
LOC_Os05g09000
Os.23351.1.A1_at--622--6731Chr05:4961823..4961847 (25 bp)
GTTCTTACTTTTACCCCATCAATAG
LOC_Os05g09000
Os.23351.1.A1_at--790--3091Chr05:4961803..4961827 (25 bp)
AATAGCAACCCATAGTCTCTGCTGA
LOC_Os05g09000
Os.23351.1.A1_at--1053--7151Chr05:4961789..4961813 (25 bp)
GTCTCTGCTGATGGATTACTGTTTA
LOC_Os05g09000
Os.23351.1.A1_at--242--10191Chr05:4961766..4961790 (25 bp)
TATAGAGCCTTGGTTCAGCTGCTCA
LOC_Os05g09000
Os.23351.1.A1_at--1088--431Chr05:4961704..4961728 (25 bp)
ATCTTATCTTGACCCATAGCTGACA
LOC_Os05g09000
Target Sequence 
AGAGTACCTTAGCTGGGATCCATGACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCT
CTATGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGCCTTTGTAAACCAGAGTT
TGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTACCTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTG
AGCCTGGATCCTTATAGTCTGATAGCGCAGAAATCTGGCTAATGGTTCTTACTTTTACCCCATCAATAGCAACCCATAGT
CTCTGCTGATGGATTACTGTTTATAGAGCCTTGGTTCAGCTGCTCAAATATAATTGGTAAATATAGTAGGCAATGTGAAA
CTCATCTTATCTTGACCCATAGCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23351.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis