Browse Element(s) Details

Os.23402.1.A1_at

Description

gb:CA759485
DB_XREF= gi:25803524
DB_XREF=BR060003A20E11.ab1
CLONE=BR060003A20E11.ab1
TID=Os.23402.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23402 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187789.1 (A.thaliana) putative T-complex protein 1, ETA subunit (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21620	7/11	T-complex protein 1, eta subunit, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21580	Os.25122.1.S1_at	10/11	6	+	12445398..12447248	expressed protein
LOC_Os06g21590	Os.12713.1.S1_at	11/11	6	+	12451674..12453198	Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed
LOC_Os06g21600	Os.9272.1.S1_at	11/11	6	+	12455787..12461589	Uncharacterized ACR, YdiU/UPF0061 family protein, expressed
LOC_Os06g21610	OsAffx.29313.1.S1_at	1/11	6	+	12463880..12469800	transposon protein, putative, Mutator sub-class
LOC_Os06g21620	OsAffx.15539.1.S1_at	10/11	6	+	12470841..12475474	T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620	Os.23402.1.A1_at	7/11	6	+	12470841..12475474	T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620	Os.53962.1.S1_at	1/11	6	+	12470841..12475474	T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21630	OsAffx.4895.1.S1_at	11/11	6	+	12476057..12477181	hypothetical protein
LOC_Os06g21640	OsAffx.447.1.S1_at	10/11	6	+	12481570..12485827	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21640	Os.52609.1.S1_at	1/11	6	+	12481570..12485827	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21640	OsAffx.22947.2.S1_x_at	1/11	6	+	12481570..12485827	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21650	OsAffx.27754.1.S1_at	11/11	6	+	12489568..12489930	hypothetical protein
LOC_Os06g21660	Os.40360.1.S1_x_at	1/11	6	+	12498021..12499451	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.23402.1.A1_at--296--873	1	Chr06:12472703..12472727 (25 bp)	TGTCTGATCCTCTACAATGCCAATA	LOC_Os06g21620
Os.23402.1.A1_at--594--1085	1	NONE	TTGGCAATTGGTGGTCTCGCAACAT	NONE
Os.23402.1.A1_at--728--773	1	NONE	GGTGGTCTCGCAACATAGGTTATAG	NONE
Os.23402.1.A1_at--85--1011	1	NONE	TATGGCGTTGATAGCTATTTTGGCA	NONE
Os.23402.1.A1_at--1015--203	1	Chr06:12472365..12472389 (25 bp)	ACTATAGTGATCCTTTCTGTTGAAA	LOC_Os06g21620
Os.23402.1.A1_at--546--677	1	Chr06:12472221..12472245 (25 bp)	GTTACAGAGATTTGCACTTGTCCTT	LOC_Os06g21620
Os.23402.1.A1_at--645--511	1	Chr06:12472208..12472232 (25 bp)	GCACTTGTCCTTTTGAATGCTGGAG	LOC_Os06g21620
Os.23402.1.A1_at--783--853	1	NONE	TGGAGCTGCAGTTTGCACCTTTTTA	NONE
Os.23402.1.A1_at--254--109	1	Chr06:12471001..12471025 (25 bp)	AGGGCGACAACACTCTTGCATGGAT	LOC_Os06g21620
Os.23402.1.A1_at--694--561	1	Chr06:12470941..12470965 (25 bp)	GACAAAAGTTCACCTATTGCACTGG	LOC_Os06g21620
Os.23402.1.A1_at--697--499	1	Chr06:12470878..12470902 (25 bp)	GCATGTTTGTACTGTGTGACGATTT	LOC_Os06g21620

Target Sequence

TGTCTGATCCTCTACAATGCCAATAAATCTTTGATGCTGAATGGAATGATTTATGACAAAGTTGGATAAATGTGTGAAAA
AGTGGGGTAAAAACAGTCCTTTCTCGGTTGGCAATTGGTGGTCTCGCAACATAGGTTATAGATTGAACTGAGTCGTAAGT
ATGGCGTTGATAGCTATTTTGGCAACAAATAAGCTCAACTATAGTGATCCTTTCTGTTGAAAAGGAACTTGTTTTTTTTG
CGAATTTTTTGAGTGGTTTGTTGTTACAGAGATTTGCACTTGTCCTTTTGAATGCTGGAGCTGCAGTTTGCACCTTTTTA
AGTGTCCTATTGTTGTTAAGGGCGACAACACTCTTGCATGGATGATGGTTCAATGGAAAAATTAGGAATTGCAGCAACGA
CAAAAGTTCACCTATTGCACTGGTGCAATTTTGTAATTAAGATATTGTCCCATGATGAAATGCATGTTTGTACTGTGTGA
CGATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis