Browse Element(s) Details


Os.23416.2.S1_at

Description gb:AK121529.1
DB_XREF= gi:37991152
TID=Os.23416.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030K23, full insert sequence.
FL= gb:AK121529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3927011/11Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os05g145804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein
LOC_Os07g39270Os.23416.2.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_x_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39280Os.47410.1.S1_at11/117+23510217..23513938expressed protein
LOC_Os07g39290Os.54465.1.S1_at3/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39290Os.49478.1.S1_at1/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39300Os.8749.1.S1_at11/117+23525572..23533785expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004311molecular_functionfarnesyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23416.2.S1_at--1--6573Chr07:23505601..23505625 (25 bp)
GATTCAGGGATGAGCTTGTCTTGGA
LOC_Os07g39270
Os.23416.2.S1_at--655--7431Chr07:23505558..23505582 (25 bp)
GTGTTTCAGTGATGTTCTTCTGTTT
LOC_Os07g39270
Os.23416.2.S1_at--209--10612Chr07:23505541..23505565 (25 bp)
TTCTGTTTACAGCAATTGGGATCAA
LOC_Os07g39270
Os.23416.2.S1_at--981--9573Chr07:23505486..23505510 (25 bp)
TCTTGGTTCCAAGCATGCAGAAAAC
LOC_Os07g39270
Os.23416.2.S1_at--448--2871Chr07:23505449..23505473 (25 bp)
AAGTGTTTAGTTACAGTGCCGTAGT
LOC_Os07g39270
Os.23416.2.S1_at--1122--6571Chr07:23505405..23505429 (25 bp)
GATTCCTGTCTATAGGTGTGCATTC
LOC_Os07g39270
Os.23416.2.S1_at--474--7471Chr07:23505390..23505414 (25 bp)
GTGTGCATTCAGTCTTTTGGTCAAT
LOC_Os07g39270
Os.23416.2.S1_at--425--3671Chr07:23505377..23505401 (25 bp)
CTTTTGGTCAATTCGCTTTGTAGCA
LOC_Os07g39270
Os.23416.2.S1_at--1086--3832Chr07:23505300..23505324 (25 bp)
CCGAAATTCGGTTAATCCTGTCTAT
LOC_Os07g39270
Os.23416.2.S1_at--589--9991Chr07:23505239..23505263 (25 bp)
TAGCCCCTGCATAAGGTTTCCTGTA
LOC_Os07g39270
Os.23416.2.S1_at--960--6791Chr07:23505164..23505188 (25 bp)
GTTATAAGCTGCACCTTTCTTGTTC
LOC_Os07g39270
Target Sequence 
GATTCAGGGATGAGCTTGTCTTGGAAATTGTTCTGTTGAACATGTGTTTCAGTGATGTTCTTCTGTTTACAGCAATTGGG
ATCAATGTTTCTCTAACAGCTATATATATGTATATTCTTGGTTCCAAGCATGCAGAAAACTTCAATCAGAGAAAGTGTTT
AGTTACAGTGCCGTAGTAAATAAATCGGTTATAATTGATTCCTGTCTATAGGTGTGCATTCAGTCTTTTGGTCAATTCGC
TTTGTAGCAAAATTCAGTTAGTCAAAACTCAGGAATGAATTGTTATTGGGAAAAGGCAAGACCGAAATTCGGTTAATCCT
GTCTATTGCTCAAAAACCTATACAAGCCTTTCATAGTGAATGTAGCCCCTGCATAAGGTTTCCTGTACAGGTACAGTAGG
ACCTTGACTAAATGTTTTTCATTGGAATAATGGAATGGTTATAAGCTGCACCTTTCTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23416.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis