Browse Element(s) Details


Os.23434.1.S1_s_at

Description gb:AK071489.1
DB_XREF= gi:32981512
TID=Os.23434.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098E09, full insert sequence.
FL= gb:AK071489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5146011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51410Os.9263.1.S1_s_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51410Os.9263.1.S1_at11/116+31135694..31144707prolyl oligopeptidase family protein, expressed
LOC_Os06g51420Os.53248.1.A1_at11/116+31146959..31149547coiled-coil domain containing 12, putative, expressed
LOC_Os06g51430Os.51219.1.S1_at11/116+31150350..31155613signal peptide peptidase family protein, expressed
LOC_Os06g51440Os.47871.1.S1_at10/116+31156331..31157286transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g51450OsAffx.16021.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51450Os.5716.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51460Os.23434.1.S1_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51460Os.23434.1.S1_s_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51470OsAffx.16018.1.S1_at11/116+31178205..31178814expressed protein
LOC_Os06g51480Os.9174.1.S1_a_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.1.S1_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.2.S1_x_at11/116+31180672..31183728expressed protein
LOC_Os06g51490Os.15074.1.S1_at11/116+31183920..31186614PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23434.1.S1_s_at--1084--4911Chr06:31169113..31169137 (25 bp)
GCTTCCGGTAGTGCTGACTCTGATA
LOC_Os06g51460
Os.23434.1.S1_s_at--845--10011Chr06:31169090..31169114 (25 bp)
TAGCAACGCAGCAGAAGGACACCTT
LOC_Os06g51460
Os.23434.1.S1_s_at--511--2911Chr06:31169076..31169100 (25 bp)
AAGGACACCTTCTTCGCGAACCTGT
LOC_Os06g51460
Os.23434.1.S1_s_at--447--5431Chr06:31169059..31169083 (25 bp)
GAACCTGTGCTACACCAAGTGGGCG
LOC_Os06g51460
Os.23434.1.S1_s_at--41--1031Chr06:31169004..31169028 (25 bp)
AGGTACTCGGGCGTGTGGCTCATAA
LOC_Os06g51460
Os.23434.1.S1_s_at--729--7471Chr06:31168992..31169016 (25 bp)
GTGTGGCTCATAACGCGATGCGGCT
LOC_Os06g51460
Os.23434.1.S1_s_at--245--2771Chr06:31168959..31168983 (25 bp)
AAGAGCGGCTACGACATCAACGACA
LOC_Os06g51460
Os.23434.1.S1_s_at--385--2091Chr06:31168946..31168970 (25 bp)
ACATCAACGACAGGTTCCTCTGCAT
LOC_Os06g51460
Os.23434.1.S1_s_at--640--431Chr06:31168863..31168887 (25 bp)
ATCTTCCAGAAGCACTGATGCCTGC
LOC_Os06g51460
Os.23434.1.S1_s_at--785--9531Chr06:31168822..31168846 (25 bp)
TCTACTGTACATCTATCTCCATCTA
LOC_Os06g51460
Os.23434.1.S1_s_at--503--471Chr06:31168808..31168832 (25 bp)
ATCTCCATCTATTATACTCTCTCTA
LOC_Os06g51460
Target Sequence 
GCTTCCGGTAGTGCTGACTCTGATAGCAACGCAGCAGAAGGACACCTTCTTCGCGAACCTGTGCTACACCAAGTGGGCGC
NTGGAAGGGTTNCGTGATCGCGAATGCGCAGAGGTACTCGGGCGTGTGGCTCATAACGCGATGCGGCTCCCTCCTCAAGA
GCGGCTACGACATCAACGACAGGTTCCTCTGCATTNCTCGTCCTCGCCGCCAACGGTGTCCTCTTCCGCNGCGTCGCCTT
CTTCTGCATGGTCATCTTCCAGAAGCACTGATGCCTGCCTGCCTGCCTGTCTCCTCTACTGTACATCTATCTCCATCTAT
TATACTCTCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23434.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis