Browse Element(s) Details


Os.23471.1.S1_at

Description gb:AK072702.1
DB_XREF= gi:32982725
TID=Os.23471.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138M17, full insert sequence.
FL= gb:AK105077.1 gb:AK072702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1836610/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18320OsAffx.18918.1.S1_at11/1111+10306734..10308857hypothetical protein
LOC_Os11g18320Os.55138.1.S1_x_at1/1111+10306734..10308857hypothetical protein
LOC_Os11g18330OsAffx.31038.1.S1_at10/1111+10311838..10312380hypothetical protein
LOC_Os11g18340NANA11+10320167..10320388lupeol synthase, putative
LOC_Os11g18350NANA11+10327058..10327950retrotransposon protein, putative, unclassified
LOC_Os11g18366OsAffx.18919.1.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.3.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.7143.1.A1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.1.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.18919.1.S1_s_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_x_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.1.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_at1/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18382OsAffx.24085.1.S1_at2/1111+10357014..10357944hypothetical protein
LOC_Os11g18382OsAffx.26303.1.S1_at2/1111+10357014..10357944hypothetical protein
LOC_Os11g18382OsAffx.31040.1.S1_at1/1111+10357014..10357944hypothetical protein
LOC_Os11g18400OsAffx.7144.1.S1_at11/1111+10359269..10360424hypothetical protein
LOC_Os11g18410OsAffx.18275.1.S1_x_at3/1111+10367744..10370513hypothetical protein
LOC_Os11g18410OsAffx.30486.1.S1_at1/1111+10367744..10370513hypothetical protein
LOC_Os11g18420NANA11+10374409..10376058retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g18430NANA11+10377367..10379170retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23471.1.S1_at--1016--10231Chr11:10333258..10333282 (25 bp)
TTTGTCTATTAGGAAGGCATGCAAC
LOC_Os11g18366
Os.23471.1.S1_at--634--4991Chr11:10333242..10333266 (25 bp)
GCATGCAACTTCTTGCTGTCAAAGC
LOC_Os11g18366
Os.23471.1.S1_at--1081--4711Chr11:10333228..10333252 (25 bp)
GCTGTCAAAGCAGCTAAGTACTGGT
LOC_Os11g18366
Os.23471.1.S1_at--636--1311Chr11:10333195..10333219 (25 bp)
AGAGGATTACCTCGGTTGTCAAGTT
LOC_Os11g18366
Os.23471.1.S1_at--245--3791NONE
CTCGGTTGTCAAGTTGAGGAGTATA
NONE
Os.23471.1.S1_at--255--691Chr11:10330331..10330355 (25 bp)
GGCTTAAAGGAATCCCTCATTACCT
LOC_Os11g18366
Os.23471.1.S1_at--524--8211Chr11:10330323..10330347 (25 bp)
GGAATCCCTCATTACCTACATATAT
LOC_Os11g18366
Os.23471.1.S1_at--342--6911Chr11:10330256..10330280 (25 bp)
GTATCCACCATAGCTCAAAAGATCT
LOC_Os11g18366
Os.23471.1.S1_at--477--5691Chr11:10330224..10330248 (25 bp)
GACTATCCAAGTTGAATATTCAATT
LOC_Os11g18366
Os.23471.1.S1_at--199--10211Chr11:10330197..10330221 (25 bp)
TATTTTTTGGAGTAAGCAGGAGAAC
LOC_Os11g18366
Os.23471.1.S1_at--115--8071Chr11:10330179..10330203 (25 bp)
GGAGAACTGCATGTCATTGCATTGT
LOC_Os11g18366
Target Sequence 
TTTGTCTATTAGGAAGGCATGCAACTTCTTGCTGTCAAAGCAGCTAAGTACTGGTGGATGGGGAGAGGATTACCTCGGTT
GTCAAGTTGAGGAGTATATTGACAGTGGGAGGCCTCATGTAGTTCACACTGCGTGGGGAATGTTGGGCTTAATATATGCT
GGACAGGTTGAATTAGATCCNGCACCATTATACCGTGCGGCCAAAGAATTAATCAACATGCAGCTGGAGACAGGAGAATT
TCCACAACAAGAAATTCTTGGGAGCTTCAATTCCTCCCTCTTCTTCAATTACACAAACTACAGGAACTTGTTCCCAATCT
GGGCCCTAGGANAGTTTCACCGCCGACTTCTAGCAAAAAGGGCTTAAAGGAATCCCTCATTACCTACATATATTGTACTT
CATCTAAAAATAATCAGACATGNNTTGTAATAANNGTATCCACCATAGCTCAAAAGATCTTGNTANNGACTATCCAAGTT
GAATATTCAATTTTTATTTTTTGGAGTAAGCAGGAGAACTGCATGTCATTGCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis