Browse Element(s) Details


Os.23700.1.A1_at

Description gb:CA760293
DB_XREF= gi:25804332
DB_XREF=BR060013B11B09.ab1
CLONE=BR060013B11B09.ab1
TID=Os.23700.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23700 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200652.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g396806/11PX domain containing protein, expressed
LOC_Os06g467991/11Peroxidase 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39660OsAffx.4562.1.S1_at10/115+23199922..23201170hypothetical protein
LOC_Os05g39670Os.6752.1.S1_at9/115+23201427..23202535PRA1 family protein, expressed
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed
LOC_Os05g39700NANA5+23220401..23221663hypothetical protein
LOC_Os05g39710Os.56128.1.S1_at11/115+23224241..23224984expressed protein
LOC_Os05g39720Os.50108.1.S1_at11/115+23227315..23230243DNA-binding protein WRKY1, putative, expressed
LOC_Os05g39730Os.17275.1.S1_at11/115+23234000..23236786Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23700.1.A1_at--341--7411NONE
GTGTACGCAAAAAGGAGCAACTGAT
NONE
Os.23700.1.A1_at--188--8071Chr05:23208505..23208529 (25 bp)
GGAGCAACTGATGCGGCTTGTGTAT
LOC_Os05g39680
Os.23700.1.A1_at--686--6331NONE
GATGCGGCTTGTGTATAGTATAGTA
NONE
Os.23700.1.A1_at--233--7431Chr06:28422873..28422892 (20 bp)
GTGTATAGTATAGTACTCCGTAGTA
LOC_Os06g46799
Os.23700.1.A1_at--283--1991NONE
ACTCCGTAGTAGCTAGTAGGATCTT
NONE
Os.23700.1.A1_at--180--3691Chr05:23208536..23208559 (24 bp)
CTAGTAGGATCTTGGTTTATTTTGA
LOC_Os05g39680
Os.23700.1.A1_at--848--6811NONE
GTTTATTTTGAATTGCTGACTATAA
NONE
Os.23700.1.A1_at--1036--9131Chr05:23208602..23208626 (25 bp)
TGCGGTTCATTGTATTGCTACATTT
LOC_Os05g39680
Os.23700.1.A1_at--286--9591Chr05:23208608..23208632 (25 bp)
TCATTGTATTGCTACATTTGAGTTA
LOC_Os05g39680
Os.23700.1.A1_at--578--1971Chr05:23208767..23208791 (25 bp)
ACTGATGTATCTGGTTTGAATTTTG
LOC_Os05g39680
Os.23700.1.A1_at--477--8111Chr05:23208796..23208820 (25 bp)
GGACGCAATCCATGGTATATACAAC
LOC_Os05g39680
Target Sequence 
GTGTACGCAAAAAGGAGCAACTGATGCGGCTTGTGTATAGTATAGTACTCCGTAGTAGCTAGTAGGATCTTGGTTTATTT
TGAATTGCTGACTATAACNCTTGATTCTCCCCAGTTTTGCCNCCNTGCGGTTCATTGTATTGCTACATTTGAGTTANAGA
GAGTTTAGGCGAATGGGCTTNTCGGTGACAATTGACATGCNCGGCATATTTTTNCCCTTANTTTTTTTNCCAAAAATNCA
NTTTCCCTNTTCTAGAAATCTCTTGNGCATTTTACGGTCCTACCTCGNGNAACTGATGTATCTGGTTTGAATTTTGNCAT
GGACGCAATCCATGGTATATACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23700.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis