Browse Element(s) Details


Os.23711.1.S1_at

Description gb:AK119473.1
DB_XREF= gi:37989096
TID=Os.23711.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0056G17.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-B01, full insert sequence.
FL= gb:AK119473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7220010/11expressed protein
LOC_Os10g429701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72120Os.24890.1.S1_at4/111+42166847..42167909Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72130Os.24890.1.S2_at10/111+42168609..42169398glutathione S-transferase, putative, expressed
LOC_Os01g72140Os.22957.1.S1_at11/111+42170858..42172179Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72150OsAffx.24011.1.S1_at11/111+42173266..42174214glutathione S-transferase, putative, expressed
LOC_Os01g72160Os.52054.1.S1_at11/111+42174554..42175926Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_s_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed
LOC_Os01g72230Os.24943.1.S1_at11/111+42209376..42213258zinc finger and C2 domain protein, putative, expressed
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23711.1.S1_at--167--6831Chr01:42191774..42191798 (25 bp)
GTTTCAAACTCAGAAGGCTTAATTA
LOC_Os01g72200
Os.23711.1.S1_at--544--4891Chr01:42191758..42191782 (25 bp)
GCTTAATTAAGCCTCAAAGACCAAG
LOC_Os01g72200
Os.23711.1.S1_at--619--7871Chr01:42191696..42191720 (25 bp)
GGTTTCATTGATCATATAAGCCTTT
LOC_Os01g72200
Os.23711.1.S1_at--742--51Chr01:42191690..42191714 (25 bp)
ATTGATCATATAAGCCTTTCCTTTT
LOC_Os01g72200
Os.23711.1.S1_at--355--10292Chr10:22831228..22831251 (24 bp)
TTTCCTGCTAGATATAACCGGTTTT
LOC_Os10g42970
Os.23711.1.S1_at--517--1731Chr01:42191652..42191676 (25 bp)
ACCGGTTTTGTATCTCTAACTCGCA
LOC_Os01g72200
Os.23711.1.S1_at--96--7891Chr01:42191649..42191673 (25 bp)
GGTTTTGTATCTCTAACTCGCAGTA
LOC_Os01g72200
Os.23711.1.S1_at--108--8771Chr01:42191644..42191668 (25 bp)
TGTATCTCTAACTCGCAGTATGCAC
LOC_Os01g72200
Os.23711.1.S1_at--454--5031Chr01:42191630..42191654 (25 bp)
GCAGTATGCACACACACATTTCACT
LOC_Os01g72200
Os.23711.1.S1_at--333--1191Chr01:42191628..42191652 (25 bp)
AGTATGCACACACACATTTCACTAG
LOC_Os01g72200
Os.23711.1.S1_at--160--4371NONE
CCACTCCTGAATGTTGCCTACTGCC
NONE
Target Sequence 
GTTTCAAACTCAGAAGGCTTAATTAAGCCTCAAAGACCAAGAAATTATTAAGAATGTAATTGTAAATCTTGTAACTAAGG
TTTCATTGATCATATAAGCCTTTCCTTTTCCTGCTAGATATAACCGGTTTTGTATCTCTAACTCGCAGTATGCACACACA
CATTTCACTAGAACTTTGGNCAGATGCTAAGATGATAACTTCCTGAATATCTTCTGCAGAAAGTCTGATGTATGACNGNT
TGCATTGNTANCTTTGCATCTTCTGGTNCCAGGAAGTGTTACTTTTTTNNNNATTGAGAAGGTTCGAGCCACTCCTGAAT
GTTGCCTACTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis