Browse Element(s) Details


Os.23760.2.S1_x_at

Description gb:AK111674.1
DB_XREF= gi:37988337
TID=Os.23760.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157O10, full insert sequence.
FL= gb:AK111674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0963011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed
LOC_Os05g09650Os.49179.1.S1_at3/115+5429455..5431324Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g09660OsAffx.16862.1.S1_at2/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.29326.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.17706.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09670OsAffx.26805.1.S1_at11/115+5441685..5442425hypothetical protein
LOC_Os05g09680OsAffx.26806.1.S1_at11/115+5444670..5447995hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23760.2.S1_x_at--986--5011Chr05:5422908..5422931 (24 bp)
GCAGGGCTCGGAGATTACGTCATCT
LOC_Os05g09630
Os.23760.2.S1_x_at--1053--2691Chr05:5423512..5423536 (25 bp)
AAGCTAAGCTTGCTCGTATTGCGAA
LOC_Os05g09630
Os.23760.2.S1_x_at--226--7371Chr05:5423605..5423629 (25 bp)
GTGACTCCTCAGAAAGTGCTGGCGA
LOC_Os05g09630
Os.23760.2.S1_x_at--819--6171Chr05:5423628..5423652 (25 bp)
GAGGAGAGCTACTTGCCACCTGCGA
LOC_Os05g09630
Os.23760.2.S1_x_at--908--1751Chr05:5423645..5423669 (25 bp)
ACCTGCGAGGGTCATGAGTGCTCTA
LOC_Os05g09630
Os.23760.2.S1_x_at--191--2451Chr05:5423740..5423764 (25 bp)
AAAATATCATGCTTAGCCGCCCTTT
LOC_Os05g09630
Os.23760.2.S1_x_at--234--6431Chr05:5423770..5423794 (25 bp)
GATCATTCTCATTTGAACCTGGCCG
LOC_Os05g09630
Os.23760.2.S1_x_at--127--4511Chr05:5423791..5423815 (25 bp)
GCCGTCTTGTTTCGCTCATTGATAA
LOC_Os05g09630
Os.23760.2.S1_x_at--1113--8191Chr05:5423872..5423896 (25 bp)
GGAAGGCCCTGACAGATACTCGCGT
LOC_Os05g09630
Os.23760.2.S1_x_at--327--331Chr05:5423887..5423911 (25 bp)
ATACTCGCGTTTGCATCGTTGATGT
LOC_Os05g09630
Os.23760.2.S1_x_at--1012--1411Chr05:5423929..5423953 (25 bp)
AGAAATGGCGGGAGCTACCTCATCC
LOC_Os05g09630
Target Sequence 
GCAGGGCTCGGAGATTACGTCATCTCAGCTAAAGAATTGGCTGAACAACAGAAAAGCTAAGCTTGCTCGTATTGCGAAAG
AAAGAGGAGTACTATCTGAGGGTGAGAACGCAGATAAGCCATCTACGCCAGCTACTCCCCACCACTGTGACTCCTCAGAA
AGTGCTGGCGAGGAGAGCTACTTGCCACCTGCGAGGGTCATGAGTGCTCTAGGCATATCCAAGGGCAGCAGATTTGTGAG
CCCAGATGGCAATGAGACAACATCACAGGCAGAATTCAATCAAAATATCATGCTTAGCCGCCCTTTCACAAGATCATTCT
CATTTGAACCTGGCCGTCTTGTTTCGCTCATTGATAATGATGGGAAGGAGGTTGGCAGGGGAAAGATCTTCCAAGTTGAG
GGGAGACTGCAAGGGAAGGCCCTGACAGATACTCGCGTTTGCATCGTTGATGTTATTGAGCTCAAGATTGAGAAATGGCG
GGAGCTACCTCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23760.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis