Browse Element(s) Details


Os.23761.1.S1_at

Description gb:CA760415
DB_XREF= gi:25804454
DB_XREF=BR060004B20D01.ab1
CLONE=BR060004B20D01.ab1
TID=Os.23761.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23761 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566026.1 (A.thaliana) putative thiamin pyrophosphokinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g254408/11Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g715401/11expressed protein
LOC_Os11g328801/11CarD-like transcriptional regulator family protein, expressed
LOC_Os01g715901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25402Os.46306.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25402Os.45976.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25420OsAffx.23391.1.S1_at11/111+14359499..14360209NA
LOC_Os01g25430OsAffx.23392.1.S1_at11/111+14368177..14369407hypothetical protein
LOC_Os01g25440Os.34588.1.S1_at11/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.34588.2.S1_at10/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.23761.1.S1_at8/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006772biological_processthiamin metabolism
GO:0004788molecular_functionthiamin diphosphokinase activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23761.1.S1_at--25--7051Chr01:14379622..14379646 (25 bp)
GTAACAACTTTCTCATTTCATTTGG
LOC_Os01g25440
Os.23761.1.S1_at--941--651NONE
ATGCACTTATTATGCTTGCTGTCAA
NONE
Os.23761.1.S1_at--66--5511NONE
GTAACCCTTAAACAGAAAGTGCTCA
NONE
Os.23761.1.S1_at--854--211Chr01:14379271..14379295 (25 bp)
ATTTGTAATGTACTCCTCTTTAGGT
LOC_Os01g25440
Os.23761.1.S1_at--106--7011Chr01:14379262..14379286 (25 bp)
GTACTCCTCTTTAGGTTCTTTTATG
LOC_Os01g25440
Os.23761.1.S1_at--1079--10531Chr01:14379247..14379271 (25 bp)
TTCTTTTATGGGACGTTAGGCACAT
LOC_Os01g25440
Os.23761.1.S1_at--1088--9311Chr01:14379208..14379232 (25 bp)
TCCCTTTGTCCCATATTATAGCAAT
LOC_Os01g25440
Os.23761.1.S1_at--611--5631NONE
GACACTTTATAGTAGCATGTTCAAA
NONE
Os.23761.1.S1_at--220--9891Chr01:14379147..14379171 (25 bp)
TACTATGTAGTGTCACATCCGGTCC
LOC_Os01g25440
Os.23761.1.S1_at--581--9676Chr10:2418802..2418823 (22 bp)
TCACATCCGGTCCTAGGTTGTTATA
NONE
Os.23761.1.S1_at--326--7911Chr01:14379120..14379144 (25 bp)
GGTTGTTATATTATGTCCTAGGTTG
LOC_Os01g25440
Target Sequence 
GTAACAACTTTCTCATTTCATTTGGATTTTGNTGTTTATTAAATTTAAATTATTCCTTGCAGATATTGATTAATGATAAG
TNATAGCTGNTGCTACCTCTGATCACAAAAATATGCACTTATTATGCTTGCTGTCAAACTATATTNGNTTTGNCCAAATA
TGNTATCTATATCATATAATTTGGNTATATCAAAATGNATGCAGTATTTTTTTAATGAAAGNTGATAAAATTTAGNGGTC
AAGGNGGCATTTNGTAGACTTCAAAAAAAAAAAAACAAATTATTTACTTATTTTATGAACAGGGGTAGTAACCCTTAAAC
AGAAAGTGCTCAAAATAAGCATTTTTTACGATATTATTTGTAATGTACTCCTCTTTAGGTTCTTTTATGGGACGTTAGGC
ACATAAATAGGGTACTACTCCCTTTGTCCCATATTATAGCAATTTAGGACACTTTATAGTAGCATGTTCAAATTTGTTGT
ACTATGTAGTGTCACATCCGGTCCTAGGTTGTTATATTATGTCCTAGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis