Browse Element(s) Details


Os.24035.1.S1_at

Description gb:AK103828.1
DB_XREF= gi:32989037
TID=Os.24035.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147N05, full insert sequence.
FL= gb:AK103828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4296010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42884Os.12374.2.S1_x_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_a_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_at7/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884OsAffx.29729.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.55372.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42900Os.55055.1.S1_at11/1112+26629559..26631216transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g42910NANA12+26635589..26637581Sodium/calcium exchanger protein, expressed
LOC_Os12g42920OsAffx.7872.1.S1_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42920OsAffx.7872.1.S1_x_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42930OsAffx.20095.1.S1_at11/1112+26641060..26644749hypothetical protein
LOC_Os12g42940Os.20602.2.S1_x_at11/1112+26647548..26649730hAT family dimerisation domain containing protein
LOC_Os12g42950OsAffx.7873.1.S1_at11/1112+26651130..26652215hypothetical protein
LOC_Os12g42960Os.24035.1.S1_at10/1112+26653186..26655802expressed protein
LOC_Os12g42970Os.11382.1.S1_at11/1112+26659916..26662907GATA zinc finger family protein, expressed
LOC_Os12g42980Os.2258.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42980OsAffx.32164.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42990OsAffx.7874.1.S1_at11/1112+26674244..26675783AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24035.1.S1_at--376--1311Chr12:26653749..26653773 (25 bp)
AGATGGTCACCCACCACTTGAAAGT
LOC_Os12g42960
Os.24035.1.S1_at--878--10171Chr12:26653719..26653743 (25 bp)
TATACAACACTGCTCAGGGCCAGGT
LOC_Os12g42960
Os.24035.1.S1_at--164--1091Chr12:26653704..26653728 (25 bp)
AGGGCCAGGTACTAATATTCTTCAG
LOC_Os12g42960
Os.24035.1.S1_at--41--3111Chr12:26653645..26653669 (25 bp)
AATTTTGGGACTCAATTCGGCAGGA
LOC_Os12g42960
Os.24035.1.S1_at--151--1271Chr12:26653581..26653605 (25 bp)
AGATTTGAAGTTCCCGGCTGACGAT
LOC_Os12g42960
Os.24035.1.S1_at--675--7771Chr12:26653538..26653562 (25 bp)
GGTGCAGCCAAATCTCCATGTCAAG
LOC_Os12g42960
Os.24035.1.S1_at--488--6631Chr12:26653427..26653451 (25 bp)
GTTGTGGCAATCATTGCTCTCTTCT
LOC_Os12g42960
Os.24035.1.S1_at--409--3291Chr12:26653383..26653407 (25 bp)
CAAAGAGCCTTATGTTGTTCCTACA
LOC_Os12g42960
Os.24035.1.S1_at--119--10671Chr12:26653340..26653364 (25 bp)
TTGCGATGTGCATCAAGCCATCCGT
LOC_Os12g42960
Os.24035.1.S1_at--295--2651Chr12:26653326..26653350 (25 bp)
AAGCCATCCGTTTTTTCAGGAATTG
LOC_Os12g42960
Os.24035.1.S1_at--474--7991NONE
GGATGTACTTTTCTCTTATGTGGCC
NONE
Target Sequence 
AGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAA
ACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCC
CTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATG
TCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACNGTTCTCACTATCCAGTTTTTCTTTTCGTTT
TTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATAT
CTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTAT
AGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTACCATT
TCTGGATGTACTTTTCTCTTATGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis