Browse Element(s) Details


Os.24174.1.A1_at

Description gb:AK066895.1
DB_XREF= gi:32976913
TID=Os.24174.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090I22, full insert sequence.
FL= gb:AK066895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3824011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38210Os.5093.1.S1_at11/118+24089567..24095822Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38220Os.10747.1.S1_s_at11/118+24099848..24101100Dof domain, zinc finger family protein, expressed
LOC_Os08g38230NANA8+24103317..24103630hypothetical protein
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24174.1.A1_at--574--10151Chr08:24107468..24107492 (25 bp)
TATCATCGGCACAGGGACCGTGATT
LOC_Os08g38240
Os.24174.1.A1_at--574--5351Chr08:24107416..24107440 (25 bp)
GAAGATCATCTGGTGTGCGCAGCAG
LOC_Os08g38240
Os.24174.1.A1_at--967--8931Chr08:24107356..24107380 (25 bp)
TGACGCCTGAGTAGCATAGCTCGAT
LOC_Os08g38240
Os.24174.1.A1_at--294--3791Chr08:24107337..24107361 (25 bp)
CTCGATGCGCTACTTCTCATATAGA
LOC_Os08g38240
Os.24174.1.A1_at--1028--6191Chr08:24107314..24107338 (25 bp)
GAGGCAATACCAATCCAGGGCATCT
LOC_Os08g38240
Os.24174.1.A1_at--323--1711Chr08:24107259..24107283 (25 bp)
ACCAACTCTTTACTGCTTGTAGCTG
LOC_Os08g38240
Os.24174.1.A1_at--1015--9991Chr08:24107240..24107264 (25 bp)
TAGCTGTGGTGGTTCTTACTGCTTG
LOC_Os08g38240
Os.24174.1.A1_at--539--8711Chr08:24107215..24107239 (25 bp)
TGTCTCCGGCGATCTGTTGTAGCAT
LOC_Os08g38240
Os.24174.1.A1_at--458--5991Chr08:24105626..24105650 (25 bp)
GAGACTTTGGATCTGTTCTGCTACA
LOC_Os08g38240
Os.24174.1.A1_at--519--5351Chr08:24105600..24105624 (25 bp)
GAAGATCGCCTAACCTGGATGATAG
LOC_Os08g38240
Os.24174.1.A1_at--477--2071Chr08:24105477..24105501 (25 bp)
ACATTACTCTGAGGTGTACCGTTTT
LOC_Os08g38240
Target Sequence 
TATCATCGGCACAGGGACCGTGATTCAGAGCGTAATGAAGATTGGGACAGAGGAAGATCATCTGGTGTGCGCAGCAGGTC
TAGGGAGGTTGATCATTCTAAGCGTAGGCGGATGACGCCTGAGTAGCATAGCTCGATGCGCTACTTCTCATATAGAGGCA
ATACCAATCCAGGGCATCTTCTTCTTTTTGCTTACGAGCATGGACAATTACCAACTCTTTACTGCTTGTAGCTGTGGTGG
TTCTTACTGCTTGTGTCTCCGGCGATCTGTTGTAGCATTATTTGAGATCTAAAAGCGGTTGGAGACTTTGGATCTGTTCT
GCTACATGAAGATCGCCTAACCTGGATGATAGTTGTTTCTTGATGTATTTTGATGTGTCTGGGAGAGCATACAAACATAA
GAATCTATAAATGTGTAAGATGCTTTGTAGTTTGGACCAATTTTTGGAAAACATTACTCTGAGGTGTACCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24174.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis