Browse Element(s) Details


Os.24325.1.A1_at

Description gb:AK064131.1
DB_XREF= gi:32974149
TID=Os.24325.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F10, full insert sequence.
FL= gb:AK064131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3114011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31090Os.52823.1.S1_at9/114+18402286..18406681hypothetical protein
LOC_Os04g31090OsAffx.14062.1.S1_at7/114+18402286..18406681hypothetical protein
LOC_Os04g31090Os.17370.1.S1_x_at1/114+18402286..18406681hypothetical protein
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein
LOC_Os04g31160OsAffx.14064.1.S1_at10/114+18441403..18445020hypothetical protein
LOC_Os04g31170OsAffx.26266.1.S1_at11/114+18450202..18455962expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24325.1.A1_at--378--8351Chr04:18431492..18431516 (25 bp)
GGCGCAACGTCAGCGGTTTCGGCAC
LOC_Os04g31140
Os.24325.1.A1_at--305--1891Chr04:18431498..18431522 (25 bp)
ACGTCAGCGGTTTCGGCACGGCATG
LOC_Os04g31140
Os.24325.1.A1_at--1136--1571Chr04:18431569..18431593 (25 bp)
AGCTCTACCTCCATCGCTAATCAGA
LOC_Os04g31140
Os.24325.1.A1_at--776--531Chr04:18431581..18431605 (25 bp)
ATCGCTAATCAGAGGCGGGCACGAC
LOC_Os04g31140
Os.24325.1.A1_at--195--8351Chr04:18431640..18431664 (25 bp)
GGCGGCAACTGGTGACTACGTGTAG
LOC_Os04g31140
Os.24325.1.A1_at--742--3991Chr04:18431711..18431735 (25 bp)
CGTGGATCTGGCGTGGATATTGCAC
LOC_Os04g31140
Os.24325.1.A1_at--976--5631Chr04:18431893..18431917 (25 bp)
GACACGCCGCAATCGATGTCCGGAG
LOC_Os04g31140
Os.24325.1.A1_at--811--4251Chr04:18431912..18431936 (25 bp)
CCGGAGCAAGCGCTAACAAAAAATT
LOC_Os04g31140
Os.24325.1.A1_at--603--7094Chr08:15822177..15822230 (25 bp)
GTCAAAATTTTGTTGTCATACCAAG
NONE
Os.24325.1.A1_at--369--1173Chr04:18432012..18432036 (25 bp)
AGTAAGGATACCAAGCATATGATGT
LOC_Os04g31140
Os.24325.1.A1_at--620--8951Chr04:18432052..18432076 (25 bp)
TCTAATAAAAACATAGCCGCCAGTT
LOC_Os04g31140
Target Sequence 
GGCGCAACGTCAGCGGTTTCGGCACGGCATGGTTGCGGGCGTGGCAACGACGGGCTGATGCGGGCTGGAGGCGCGGCAGC
TCTACCTCCATCGCTAATCAGAGGCGGGCACGACGTCGGCGGATCCGGCACGGCACGGCTGCCAGCGCGGCGGCAACTGG
TGACTACGTGTAGGGGGTGAGGAGGCGGCGCATCTGGCTGCCGCTCCGCGCCCCACGCGCGTGGATCTGGCGTGGATATT
GCACGGGTGACGGTGGGTGCGGCTGTGACGGGCAACTGCGGGCAGGAGGCAAGGCGGCGGCGAATCTGGCCGCCGTTCCG
CCCGTACGCGCACGGCGCGACCTCTGCGGCGGCAAGCTCGGACTCGGATGGATATGGAGGAACAGCGGCGGCCACCCCCA
CGACACGCCGCAATCGATGTCCGGAGCAAGCGCTAACAAAAAATTAACATATGATATAGACTGTGAGGATGTATTTGTTG
AGTCAAAATTTTGTTGTCATACCAAGTTAATTTTTTAATTAGTAAGGATACCAAGCATATGATGTATATGAAAAAGGGTT
TCTAATAAAAACATAGCCGCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24325.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis