Browse Element(s) Details


Os.24515.2.S1_at

Description gb:NM_193346.1
DB_XREF= gi:34913775
GEN=OSJNBa0026J14.16
TID=Os.24515.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24515 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) nodulin-like protein (OSJNBa0026J14.16), mRNA.
PROD=nodulin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g365802/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein
LOC_Os01g36570OsAffx.11352.1.S1_at8/111+20619437..20619733Glycine-rich protein 2, putative
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed
LOC_Os01g36630Os.33852.1.S1_at10/111+20649545..20653223jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24515.2.S1_at--510--2011Chr01:20627050..20627074 (25 bp)
ACTCTTCTTGTCACAATAATGCTGT
LOC_Os01g36580
Os.24515.2.S1_at--1104--9751Chr01:20627034..20627058 (25 bp)
TAATGCTGTCCTCATTTGTATTAGG
LOC_Os01g36580
Os.24515.2.S1_at--684--7571Chr01:20625765..20625789 (25 bp)
GGGCTGCTGCATGCCATCAAAGCAG
NONE
Os.24515.2.S1_at--47--2731Chr01:20625746..20625770 (25 bp)
AAGCAGTTTTTCCTGATTGTGCCCA
NONE
Os.24515.2.S1_at--1110--6591Chr01:20625287..20625756 (25 bp)
GATTGTGCCCAGAGCCCTGAAGAGG
NONE
Os.24515.2.S1_at--777--2771Chr01:20625268..20625292 (25 bp)
AAGAGGGAGAGAAACGCCGCTTGAT
NONE
Os.24515.2.S1_at--599--2371Chr01:20625257..20625281 (25 bp)
AAACGCCGCTTGATATGCGTGCCCT
NONE
Os.24515.2.S1_at--905--9811Chr01:20624791..20625250 (25 bp)
TAAAAAGCGCACTGACGCTGCCCAC
NONE
Os.24515.2.S1_at--569--8331Chr01:20624765..20624789 (25 bp)
GGCTGCAGTGCCAGATCTGGTCTTG
NONE
Os.24515.2.S1_at--1068--471Chr01:20624751..20624775 (25 bp)
ATCTGGTCTTGGCAACTCCAACAAA
NONE
Os.24515.2.S1_at--874--9191Chr01:20624735..20624759 (25 bp)
TCCAACAAACCTTTTGCACTGCCAT
NONE
Target Sequence 
ACTCTTCTTGTCACAATAATGCTGTCCTCATTTGTATTAGGAGAAGCAGTCACCCTGGGAAGCATAATAAGCGGAGTGGT
AATGGTTGGTGGTCTTTATTGTGTTCTTTGGGCCAAGAAAAGTGAACAGGCAGCTATCAGTAAGCAACAGATGGGGCTGC
TGCATGCCATCAAAGCAGTTTTTCCTGATTGTGCCCAGAGCCCTGAAGAGGGAGAGAAACGCCGCTTGATATGCGTGCCC
TCCCGCCTAAAAAGCGCACTGACGCTGCCCACTGGCTGCAGTGCCAGATCTGGTCTTGGCAACTCCAACAAACCTTTTGC
ACTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24515.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis