Browse Element(s) Details


Os.24572.1.S1_at

Description gb:AK120277.1
DB_XREF= gi:37989900
TID=Os.24572.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049C19, full insert sequence.
FL= gb:AK120277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g336706/11patatin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33630Os.8407.1.S1_at10/117+20085461..20091562potyviral helper component protease-interacting protein 2, putative, expressed
LOC_Os07g33640NANA7+20096291..20097106hypothetical protein
LOC_Os07g33650Os.10455.1.S1_at11/117+20105113..20108087expressed protein
LOC_Os07g33660Os.36706.1.S1_at2/117+20111898..20113159expressed protein
LOC_Os07g33670Os.24572.1.S1_at6/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.21802.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.18355.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33680Os.23201.1.S1_at11/117+20125344..20127139succinate dehydrogenase subunit 3, putative, expressed
LOC_Os07g33690Os.57049.1.S1_at11/117+20127954..20133545NB-ARC domain containing protein, expressed
LOC_Os07g33700Os.35344.3.S1_x_at10/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700Os.35344.18.S1_x_at9/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700OsAffx.22940.5.S1_x_at3/117+20134667..20140527transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24572.1.S1_at--85--851Chr07:20114092..20114116 (25 bp)
ATGGCAGCCTTGAGAACGGGAAGTT
LOC_Os07g33670
Os.24572.1.S1_at--897--4231Chr07:20114059..20114083 (25 bp)
CCGATGATGAGGCTTCCGAGTCTGA
LOC_Os07g33670
Os.24572.1.S1_at--733--1151Chr07:20114041..20114065 (25 bp)
AGTCTGAGGCGGAACCTGTTAGCCC
LOC_Os07g33670
Os.24572.1.S1_at--494--2631Chr07:20114029..20114053 (25 bp)
AACCTGTTAGCCCTACGAGTGACTG
LOC_Os07g33670
Os.24572.1.S1_at--154--471Chr07:20113931..20113955 (25 bp)
ATCTGCCTCCTGTATGACAAGCTGT
LOC_Os07g33670
Os.24572.1.S1_at--584--7031Chr07:20113842..20113866 (25 bp)
GTACAACTGCCATTTACCCAATGTT
LOC_Os07g33670
Os.24572.1.S1_at--634--6091Chr07:20113807..20113831 (25 bp)
GAGTACATTCACAGTCCTTATAGAA
NONE
Os.24572.1.S1_at--654--191Chr07:20113697..20113721 (25 bp)
ATTTCGTTGTTGAGGCTGTGGTCGC
NONE
Os.24572.1.S1_at--40--7491Chr07:20113680..20113704 (25 bp)
GTGGTCGCAGACTGTTTGTTTCCCC
NONE
Os.24572.1.S1_at--591--9551Chr07:20113647..20113671 (25 bp)
TCTTTCGGCGAAATGCTGTTTGTAA
NONE
Os.24572.1.S1_at--1099--8731Chr07:20113600..20113624 (25 bp)
TGTACTGACGGCAACATGGACATAG
NONE
Target Sequence 
ATGGCAGCCTTGAGAACGGGAAGTTNGTCATTGCCGATGATGAGGCTTCCGAGTCTGAGGCGGAACCTGTTAGCCCTACG
AGTGACTGGGAAGACAGCGACATGGAGAAAAATGGCGATCGCAGCAAAGATTTCGATGATGAGGAGTACATGGCTCAGTT
CATCTGCCTCCTGTATGACAAGCTGTTCCGCGAGGGCGTGACGGTGGACACGGCGCTCCAGCAAGCGCTCCGGTCACATC
CAAAGTTGAAGTACAACTGCCATTTACCCAATGTTTTGTAGGTAGGAGTACATTCACAGTCCTTATAGAAATATATACCA
AGATGAATATAGAAGAAGAAAAGAATAATATGATCTGGCGGATTCATGAGGGGGTTTATAGAGTTTATACTCGTAATTTC
GTTGTTGAGGCTGTGGTCGCAGACTGTTTGTTTCCCCCAAATGAATCTTTCGGCGAAATGCTGTTTGTAATTCTAGGCTA
GTACATAGAACATGTACTGACGGCAACATGGACATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis