Browse Element(s) Details


Os.24611.1.S1_at

Description gb:AK067651.1
DB_XREF= gi:32977669
TID=Os.24611.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013113P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013113P22, full insert sequence.
FL= gb:AK067651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4090011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40850Os.40855.5.S1_x_at11/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_at9/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_x_at6/112+24756878..24759423hypothetical protein
LOC_Os02g40860Os.27664.1.S1_at11/112+24760940..24766881Casein kinase I, epsilon isoform, putative, expressed
LOC_Os02g40870Os.16625.1.S1_at11/112+24767680..24769171Phosphatidylinositol N-acetylglucosaminyltransferase family protein, expressed
LOC_Os02g40880OsAffx.2932.1.S1_s_at11/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40880Os.7150.1.S1_at1/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40890Os.7522.1.S1_at10/112+24774059..24776899expressed protein
LOC_Os02g40900Os.24611.1.S1_at11/112+24777346..24780675expressed protein
LOC_Os02g40910OsAffx.12437.1.S1_at11/112+24783662..24784196hypothetical protein
LOC_Os02g40920Os.26886.1.S1_x_at7/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920Os.26886.3.S1_x_at4/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920OsAffx.16244.1.S1_x_at1/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.2.S1_s_at8/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.6.S1_s_at5/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930OsAffx.3425.1.S1_at1/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40940OsAffx.31018.3.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940OsAffx.31018.2.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940Os.50578.1.S1_x_at7/112+24801452..24805997hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24611.1.S1_at--1141--10131Chr02:24778115..24778139 (25 bp)
TATCCATCCTTCAACATGGCTAGGG
LOC_Os02g40900
Os.24611.1.S1_at--282--9771Chr02:24777932..24777956 (25 bp)
TAATGCGTCGGATCTTGCTGCAGCA
LOC_Os02g40900
Os.24611.1.S1_at--29--3051Chr02:24777748..24777772 (25 bp)
AATCGACTACGAGGCATTACAGAAG
LOC_Os02g40900
Os.24611.1.S1_at--716--6111Chr02:24777562..24777586 (25 bp)
GAGTGATCCCTAGTGTCATGTTGCA
LOC_Os02g40900
Os.24611.1.S1_at--408--6671Chr02:24777525..24777549 (25 bp)
GTTGCTCCTGCAATAAACGACGTTA
LOC_Os02g40900
Os.24611.1.S1_at--207--9831Chr02:24777512..24777536 (25 bp)
TAAACGACGTTAAAGCCTTCAGCGC
LOC_Os02g40900
Os.24611.1.S1_at--447--4931Chr02:24777477..24777501 (25 bp)
GCTTGTCACGTTTGGCCTAGTGATT
LOC_Os02g40900
Os.24611.1.S1_at--987--8791Chr02:24777453..24777477 (25 bp)
TGTTCTAGGGTAGTATGGCTCGTCC
LOC_Os02g40900
Os.24611.1.S1_at--108--871Chr02:24777439..24777463 (25 bp)
ATGGCTCGTCCCAATTTGTAATGGA
LOC_Os02g40900
Os.24611.1.S1_at--329--2531Chr02:24777375..24777399 (25 bp)
AACGGTACGAAGTTCTCTTATGATG
LOC_Os02g40900
Os.24611.1.S1_at--709--9551Chr02:24777360..24777384 (25 bp)
TCTTATGATGAACTCCTGTAGCGTG
LOC_Os02g40900
Target Sequence 
TATCCATCCTTCAACATGGCTAGGGTTATTAGGGACAAATGGACTGGTAAAACTAGGGGCTATGNCTTTGTTAGTTTTGC
TAATGCGTCGGATCTTGCTGCAGCATTGAAAGAGATGAATGGTAAATATGTTGGAAACAGGCCAATCAAACTACGCAAGA
GCACATGGAAGAACAGAATCGACTACGAGGCATTACAGAAGCCGAAGACTCAACCNCAGAAGAAGTTCAAAGCGCAGAAA
AAAAGCNTTCTACNCAAGTGAAGTAAATTCNCTCTCTAGAGAGTGATCCCTAGTGTCATGTTGCACNTGAGTCCTTTGTT
GCTCCTGCAATAAACGACGTTAAAGCCTTCAGCGCCCGGCGGTGCGCTTGTCACGTTTGGCCTAGTGATTGTTCTAGGGT
AGTATGGCTCGTCCCAATTTGTAATGGAAATTTAGGTGTAAATATTNTAATGACTGGTACCGTTGTGAACGGTACGAAGT
TCTCTTATGATGAACTCCTGTAGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis