Browse Element(s) Details


Os.24642.1.S1_at

Description gb:AK072226.1
DB_XREF= gi:32982249
TID=Os.24642.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013168I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013168I08, full insert sequence.
FL= gb:AK072226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g415304/11serine/threonine-protein kinase GCN2, putative
LOC_Os01g226601/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41500Os.6044.1.S1_at11/114+24392251..24396065expressed protein
LOC_Os04g41510OsAffx.26416.1.S1_at11/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41510Os.52463.1.S1_x_at9/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative
LOC_Os04g41540OsAffx.14232.1.S1_x_at11/114+24421526..24422116EF hand family protein
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed
LOC_Os04g41570Os.55009.1.S1_at11/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41570Os.6328.1.S1_at10/114+24436019..24440974ER33 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006427biological_processhistidyl-tRNA aminoacylation
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0004821molecular_functionhistidine-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24642.1.S1_at--781--10871Chr04:24416407..24416431 (25 bp)
TTGGCAGCCTGCTCTTTATTCACTT
LOC_Os04g41530
Os.24642.1.S1_at--931--111Chr04:24416424..24416694 (25 bp)
ATTCACTTCAGTCTTGGTTGCCCTT
LOC_Os04g41530
Os.24642.1.S1_at--1140--6672Chr04:24416686..24416710 (25 bp)
GTTGCCCTTCTGTGAACCAAGATTA
LOC_Os04g41530
Os.24642.1.S1_at--201--5411Chr04:24416699..24416723 (25 bp)
GAACCAAGATTACGCACCGTGGCTT
LOC_Os04g41530
Os.24642.1.S1_at--9--9771Chr04:24416766..24416790 (25 bp)
TAATCTGGGCTGTCCTCTTGTGGAG
NONE
Os.24642.1.S1_at--871--4851Chr04:24416883..24416907 (25 bp)
GCTACGCAACAAATTCACCCAGTTT
NONE
Os.24642.1.S1_at--1054--6511Chr04:24417066..24417090 (25 bp)
GATTTGTAATTTTGCTTCCTCGTAA
NONE
Os.24642.1.S1_at--70--5891Chr04:24417102..24417126 (25 bp)
GAGCGAGCCAGGGTGCCCAATGTTT
NONE
Os.24642.1.S1_at--112--1351Chr04:24417137..24417161 (25 bp)
AGAGTATTCCTGTCACATGTCCAAG
NONE
Os.24642.1.S1_at--895--8691Chr04:24417154..24417178 (25 bp)
TGTCCAAGGACTCATATTTCATCGT
NONE
Os.24642.1.S1_at--380--511Chr04:24417174..24417198 (25 bp)
ATCGTCTTTCACTGCCTTTTATGAT
NONE
Target Sequence 
TTGGCAGCCTGCTCTTTATTCACTTCAGTCTTGGTTGCCCTTCTGTGAACCAAGATTACGCACCGTGGCTTCGGTTCAAG
GTTCAAGGCAGTGAGGCGATTGGTGGCTTGATGTAATCTGGGCTGTCCTCTTGTGGAGGTGCTCCTGTAGTCCTGTGCAG
CTCTCGGTGGTGGTGGCGGCGGCGGCGGNNNTGGTAACCTGCACAGCTTTTTCCCCCTGTTGGTAGCGAAACCGCTACGC
AACAAATTCACCCAGTTTTNCTATATTCAATTTTGCTTCTCAATTTTATCAACAAAGCCTGCTATGTATACTACATAGTT
CAGTATGTTCTCTAGCATGTATAGGACAAAAGTTGAGTTTTGTAGATAGGTGATGCCAATTTTGCAACTAGGCAATCAAT
NTGGCGGAAAACAAGGGATTTGTAATTTTGCTTCCTCGTAAGTTTGTCAGANGAGCGAGCCAGGGTGCCCAATGTTTCCG
TTTTATAAGAGTATTCCTGTCACATGTCCAAGGACTCATATTTCATCGTCTTTCACTGCCTTTTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis