Browse Element(s) Details


Os.24793.1.A1_at

Description gb:AK071005.1
DB_XREF= gi:32981028
TID=Os.24793.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078D11, full insert sequence.
FL= gb:AK071005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5133011/11Maltose excess protein 1-like, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0007154biological_processcell communication
GO:0007275biological_processdevelopment
GO:0009629biological_processresponse to gravity
GO:0009706cellular_componentchloroplast inner membrane
GO:0005363molecular_functionmaltose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24793.1.A1_at--859--791Chr04:30178751..30178771 (21 bp)
ATGTGGTTCACTGGTTCTGCCTGGG
LOC_Os04g51330
Os.24793.1.A1_at--612--7691Chr04:30178708..30178731 (24 bp)
GGGTAACTTGGCCTGCATGTACTGC
LOC_Os04g51330
Os.24793.1.A1_at--603--2071Chr04:30178543..30178567 (25 bp)
ACATTTGGACTTCTTCTGTGGCTAG
LOC_Os04g51330
Os.24793.1.A1_at--683--3891Chr04:30178328..30178552 (25 bp)
CTGTGGCTAGGATTTACTCTCTGGA
LOC_Os04g51330
Os.24793.1.A1_at--930--8051Chr04:30178306..30178330 (25 bp)
GGAGAGATACCATTGCCCATGGCAA
LOC_Os04g51330
Os.24793.1.A1_at--687--4831Chr04:30178279..30178303 (25 bp)
GCTCACCCGTGACTTCTTTGAAGGA
LOC_Os04g51330
Os.24793.1.A1_at--448--2751Chr04:30178154..30178178 (25 bp)
AAGAACCTGTTCGACATTGGCATTA
LOC_Os04g51330
Os.24793.1.A1_at--813--7191Chr04:30178097..30178121 (25 bp)
GTCGTGGTGAAACTGGAACCTCCCA
LOC_Os04g51330
Os.24793.1.A1_at--937--1091Chr04:30178055..30178079 (25 bp)
AGTGGCATGTGCTCCTACAGAAATT
LOC_Os04g51330
Os.24793.1.A1_at--1078--2231Chr04:30178035..30178059 (25 bp)
AAATTACCAGGTGGCCAGCTTGTGC
LOC_Os04g51330
Os.24793.1.A1_at--1152--5471Chr04:30177953..30177977 (25 bp)
GAACTTTATGTTTCTCCTCTTGAAT
LOC_Os04g51330
Target Sequence 
ATGTGGTTCACTGGTTCTGCCTGGGCATCTTTCCTACAGGGTTGGGGTAACTTGGCCTGCATGTACTGCTTCGATAGCAT
CAGCAGAGAATCTTTCTTGGCAACAACATTTGGACTTCTTCTGTGGCTAGGATTTACTCTCTGGAGAGATACCATTGCCC
ATGGCAACAGCTCACCCGTGACTTCTTTGAAGGAACTTCTTTTCGGAAAGTGAATAGAACTCCNTTATGTCCATATTCAG
CAGCAAACTGCTGCCAGGCAGGAAGCTNTCCTACAATAATTAATGGTGACCGGCAAGAACCTGTTCGACATTGGCATTAT
TGAGGTGAAGCACTCNGGTCGACAACCTATTGTCGTGGTGAAACTGGAACCTCCCAGCTTGCTGCTTGCAGAAAGTGGCA
TGTGCTCCTACAGAAATTACCAGGTGGCCAGCTTGTGCATNTGGCAGNGAAGGGTACAGTGTGTAGCTTTTCTTCTTTTT
TTTTTTTGTAAGAAAGAACTTTATGTTTCTCCTCTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24793.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis