Browse Element(s) Details

Os.24816.1.A1_at

Description

gb:AK059525.1
DB_XREF= gi:32969543
TID=Os.24816.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D02, full insert sequence.
FL= gb:AK059525.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g33660	11/11	Eukaryotic-type carbonic anhydrase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g33620	OsAffx.30606.2.S1_x_at	11/11	4	+	20176783..20177366	hypothetical protein
LOC_Os04g33630	Os.49129.1.S1_at	11/11	4	+	20178236..20181835	Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630	Os.52100.1.S1_at	1/11	4	+	20178236..20181835	Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640	Os.24051.1.S1_x_at	11/11	4	+	20185524..20190557	Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640	Os.47778.1.A1_s_at	11/11	4	+	20185524..20190557	Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640	Os.24051.1.S1_at	11/11	4	+	20185524..20190557	Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640	Os.24051.2.S1_at	10/11	4	+	20185524..20190557	Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640	Os.47778.1.A1_at	1/11	4	+	20185524..20190557	Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650	OsAffx.26310.1.S1_at	9/11	4	+	20193522..20196598	expressed protein
LOC_Os04g33660	Os.24816.1.A1_at	11/11	4	+	20200327..20202617	Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670	Os.55574.1.S1_at	11/11	4	+	20204614..20205695	expressed protein
LOC_Os04g33680	Os.47985.1.S1_at	11/11	4	+	20206158..20207892	Glutaredoxin family protein, expressed
LOC_Os04g33690	Os.53585.1.S1_at	11/11	4	+	20210709..20218358	Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700	OsAffx.26311.1.S1_at	11/11	4	+	20218550..20223018	ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710	Os.7509.1.S1_at	11/11	4	+	20223788..20224534	expressed protein
LOC_Os04g33720	Os.50337.1.S1_at	11/11	4	+	20224928..20227854	Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006730	biological_process	one-carbon compound metabolism
GO:0004089	molecular_function	carbonate dehydratase activity
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24816.1.A1_at--110--919	1	Chr04:20201914..20201938 (25 bp)	TGCCGGATCTGTGAGCTTGCTGACG	LOC_Os04g33660
Os.24816.1.A1_at--1076--893	1	Chr04:20201934..20201958 (25 bp)	TGACGATGAGGCAGCACGTGCACAT	LOC_Os04g33660
Os.24816.1.A1_at--431--505	1	Chr04:20201944..20201968 (25 bp)	GCAGCACGTGCACATATACTACAGA	LOC_Os04g33660
Os.24816.1.A1_at--754--1017	1	Chr04:20201958..20201982 (25 bp)	TATACTACAGATACGTTGGGTCACT	LOC_Os04g33660
Os.24816.1.A1_at--437--597	1	Chr04:20202002..20202026 (25 bp)	GAGAACGTGATCTGGAACATCCCTG	LOC_Os04g33660
Os.24816.1.A1_at--848--209	1	Chr04:20202018..20202178 (25 bp)	ACATCCCTGCCATGCCGAGAGAGAT	LOC_Os04g33660
Os.24816.1.A1_at--622--601	1	Chr04:20202170..20202194 (25 bp)	GAGAGAGATGACACCGCAGCAGGCC	LOC_Os04g33660
Os.24816.1.A1_at--469--885	1	Chr04:20202202..20202226 (25 bp)	TGATGGCTCCCCTGGACGAAGGCTA	LOC_Os04g33660
Os.24816.1.A1_at--764--97	1	Chr04:20202309..20202333 (25 bp)	AGGAGCTCCCCGTAGGCTGACGACG	LOC_Os04g33660
Os.24816.1.A1_at--1140--713	1	Chr04:20202467..20202491 (25 bp)	GTCTAGGTTTGCTTTCTTATTTTGG	LOC_Os04g33660
Os.24816.1.A1_at--289--1053	1	Chr04:20202480..20202504 (25 bp)	TTCTTATTTTGGTTACCGGCCATAG	LOC_Os04g33660

Target Sequence

TGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTNACCACNCCAC
CGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCT
CCCCTGGACGAAGGCTACCGCCGNAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTT
CTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATC
CATNCCGGCCGATGGAGATCGCTGCGTGTTNTGGGGTCCCTTGTGTNGTGTTCTGTCCAGCAGNAGTAGTTTGTTTCTGA
AGTCGTGTGTTTATAGNGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis