Browse Element(s) Details


Os.24899.1.A1_at

Description gb:CB676901
DB_XREF= gi:29680626
DB_XREF=OSJNEe13G20.r
CLONE=OSJNEe13G20
TID=Os.24899.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.24899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipoamide dehydrogenase (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0646011/11Dihydrolipoyl dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06410OsAffx.14571.1.S1_at11/115+3267244..3267801hypothetical protein
LOC_Os05g06420Os.21445.1.S1_at11/115+3269046..3271988EARLY FLOWERING 3, putative, expressed
LOC_Os05g06430Os.5618.1.S1_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06430Os.39053.1.A1_s_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06440Os.5064.1.S1_at11/115+3281224..3285723DnaJ domain containing protein, expressed
LOC_Os05g06450Os.2349.1.S1_at11/115+3285954..3290634Tubulin gamma-2 chain, putative, expressed
LOC_Os05g06460Os.24899.1.A1_at11/115+3291409..3297735Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os05g06470Os.44893.2.S1_x_at9/115+3301300..3312031expressed protein
LOC_Os05g06470Os.44893.2.S1_at6/115+3301300..3312031expressed protein
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490Os.9469.1.S1_at11/115+3320083..3322613RNA polymerase Rpb7, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009570cellular_componentchloroplast stroma
GO:0004148molecular_functiondihydrolipoyl dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24899.1.A1_at--166--3031Chr05:3292182..3292206 (25 bp)
AATGCCATTGCCCTAGGAACTCGGT
LOC_Os05g06460
Os.24899.1.A1_at--906--4291Chr05:3292075..3292195 (25 bp)
CCTAGGAACTCGGTTGCAAGACATC
LOC_Os05g06460
Os.24899.1.A1_at--393--4071Chr05:3292018..3292042 (25 bp)
CGAGGTGCTGGACGAACTCTTTAAA
LOC_Os05g06460
Os.24899.1.A1_at--616--5771Chr05:3292008..3292032 (25 bp)
GACGAACTCTTTAAAGCAGCCAAGG
LOC_Os05g06460
Os.24899.1.A1_at--798--5072Chr05:3291897..3292017 (25 bp)
GCAGCCAAGGTTAATTCGGGTGTTT
LOC_Os05g06460
Os.24899.1.A1_at--198--8971Chr05:3291796..3291820 (25 bp)
TGAAGGTCCTTAGTTTCGTCACGCG
LOC_Os05g06460
Os.24899.1.A1_at--590--10431Chr05:3291787..3291811 (25 bp)
TTAGTTTCGTCACGCGCCTGCTCAC
LOC_Os05g06460
Os.24899.1.A1_at--714--4191Chr05:3291555..3291579 (25 bp)
CCCTGGTGTAGACTTGATCGAAATA
LOC_Os05g06460
Os.24899.1.A1_at--13--6731Chr05:3291526..3291550 (25 bp)
GTTCTGCTGCTGGTCCTGTGTATCA
LOC_Os05g06460
Os.24899.1.A1_at--351--4771Chr05:3291521..3291545 (25 bp)
GCTGCTGGTCCTGTGTATCATAAAA
LOC_Os05g06460
Os.24899.1.A1_at--223--9831Chr05:3291501..3291525 (25 bp)
TAAAAATAATTTATCTGCTCAGCTT
LOC_Os05g06460
Target Sequence 
AATGCCATTGCCCTAGGAACTCGGTTGCAAGACATCAAGTTTGCTGTTCATGCACACCCAACATTGTNCGAGGTGCTGGA
CGAACTCTTTAAAGCAGCCAAGGTTAATTCGGGTGTTTCTCNTTCTGTAAATGAACCNGTTGCANGCCTAGAGAAGGGCC
GGAGCGCAAGCCNAAGCATCCNCCNCNACCACTNCCTGAAGGTCCTTAGTTTCGTCACGCGCCTGCTCACTTCCCAGAAN
ACGNAATCGGNCAACCATAGTTAAGTGAGGANGCCTCTGACGAACTCGAGGNCAAANAGGTTCATAGNCGCCGATCTNTT
CTGTAGCTTCCATCTGTGTATGAANCATTTNCCAGATTTTTGTAGTTTTTNCGTTTGGTTTAATTATACGAGGGGCTTAA
TTATACGAACNNGAGGCNAAAAGGTTGATTGTCATGTAATATGTAGNCCCTGGTGTAGACTTGATCGAAATAATCNGTTC
TGCTGCTGGTCCTGTGTATCATAAAAATAATTTATCTGCTCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24899.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis